BLASTX nr result

ID: Panax21_contig00035485 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00035485
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...   150   8e-35
ref|XP_004173733.1| PREDICTED: uncharacterized protein LOC101232...   135   3e-30
gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thali...   133   1e-29
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       132   2e-29
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...   130   1e-28

>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score =  150 bits (380), Expect = 8e-35
 Identities = 68/156 (43%), Positives = 103/156 (66%)
 Frame = +2

Query: 2   SKSMCFLSHVPPSHTALILNCFGFQLGEFPAKFLGVPLITSKLSLVDCRPLLEKITTKIS 181
           +KS  FLS V  +    I++  GF+ GE P K+LGVPL++S+L  + C+ L+++IT+K+ 
Sbjct: 26  NKSDIFLSGVLNAEREQIIHILGFREGELPMKYLGVPLLSSRLKAIYCKGLVDRITSKVR 85

Query: 182 SWTSKFLSYVGRMQLIKSVIFASQAYWSAHFILPASTMKELQTSLSRFLWKGPSMGKHGS 361
            WT + LSY GR+QLI SV+F+ Q YW++ F+LP   +K ++  +  FLW G  M   G+
Sbjct: 86  HWTCRTLSYAGRVQLINSVLFSIQVYWASLFLLPGQVIKNVEQIMKSFLWSGSDMRTTGA 145

Query: 362 KVAWAKISLPFAEGRLAIKSLTNWNKSLIMMHLWKV 469
           KVAW ++ LP  EG L IKS+  WNK  ++ H+W +
Sbjct: 146 KVAWDQVCLPKKEGGLGIKSIKEWNKIALLKHIWNL 181


>ref|XP_004173733.1| PREDICTED: uncharacterized protein LOC101232446, partial [Cucumis
           sativus]
          Length = 382

 Score =  135 bits (340), Expect = 3e-30
 Identities = 60/154 (38%), Positives = 100/154 (64%)
 Frame = +2

Query: 2   SKSMCFLSHVPPSHTALILNCFGFQLGEFPAKFLGVPLITSKLSLVDCRPLLEKITTKIS 181
           +KS  FL  V  S  + +    GF +G  P ++LG+PL+  +L   DC PL+++IT++I 
Sbjct: 6   AKSSIFLVGVNSSKASRLAANMGFSIGHLPVRYLGLPLLFGRLQSCDCDPLIQRITSRIR 65

Query: 182 SWTSKFLSYVGRMQLIKSVIFASQAYWSAHFILPASTMKELQTSLSRFLWKGPSMGKHGS 361
           SW+++ LS+ GR+QL++SV+ + Q YW++ F+LP    +++   L  +LW+G   G+ G+
Sbjct: 66  SWSARVLSFAGRLQLVRSVLRSLQVYWASVFMLPMKVHRDVDKILRSYLWRGKEEGRGGA 125

Query: 362 KVAWAKISLPFAEGRLAIKSLTNWNKSLIMMHLW 463
           KVAW ++ LPF EG LAI+  ++WN +  +  LW
Sbjct: 126 KVAWDEVCLPFDEGGLAIRDGSSWNIASTLKILW 159


>gb|AAD08951.1| putative reverse transcriptase [Arabidopsis thaliana]
            gi|20197043|gb|AAM14892.1| putative reverse transcriptase
            [Arabidopsis thaliana]
          Length = 1412

 Score =  133 bits (335), Expect = 1e-29
 Identities = 62/155 (40%), Positives = 97/155 (62%)
 Frame = +2

Query: 5    KSMCFLSHVPPSHTALILNCFGFQLGEFPAKFLGVPLITSKLSLVDCRPLLEKITTKISS 184
            KS  F++ +     A IL  F F  G  P ++LG+PL+T +++L DC PLLEKI ++ISS
Sbjct: 995  KSTLFMASISSETCASILARFPFDSGSLPVRYLGLPLMTKRMTLADCLPLLEKIRSRISS 1054

Query: 185  WTSKFLSYVGRMQLIKSVIFASQAYWSAHFILPASTMKELQTSLSRFLWKGPSMGKHGSK 364
            W ++FLSY GR+QL+ SVI +   +W + F LP + ++E++   + FLW G  +  H +K
Sbjct: 1055 WKNRFLSYAGRLQLLNSVISSLTKFWISAFRLPRACIREIEQISAAFLWSGTDLNPHKAK 1114

Query: 365  VAWAKISLPFAEGRLAIKSLTNWNKSLIMMHLWKV 469
            VAW  +  P +EG L ++SL + NK      +W++
Sbjct: 1115 VAWHDVCKPKSEGGLGLRSLVDANKICCFKLIWRL 1149


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  132 bits (333), Expect = 2e-29
 Identities = 60/135 (44%), Positives = 88/135 (65%)
 Frame = +2

Query: 65   FGFQLGEFPAKFLGVPLITSKLSLVDCRPLLEKITTKISSWTSKFLSYVGRMQLIKSVIF 244
            +GF +G  P ++LG+PL+  KL + +  PLLEKIT +  SW +K LS+ GR+QLI SVIF
Sbjct: 753  YGFPIGTLPIRYLGLPLMNRKLRIAEYEPLLEKITARFRSWVNKCLSFAGRIQLISSVIF 812

Query: 245  ASQAYWSAHFILPASTMKELQTSLSRFLWKGPSMGKHGSKVAWAKISLPFAEGRLAIKSL 424
             S  +W + F+LP   +K +++  SRFLW G      G KV+WA + LP +EG L ++ L
Sbjct: 813  GSINFWMSTFLLPKGCIKRIESLCSRFLWSGNIEQAKGIKVSWAALCLPKSEGGLGLRRL 872

Query: 425  TNWNKSLIMMHLWKV 469
              WNK+L M  +W++
Sbjct: 873  LEWNKTLSMRLIWRL 887


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score =  130 bits (326), Expect = 1e-28
 Identities = 59/155 (38%), Positives = 99/155 (63%)
 Frame = +2

Query: 5    KSMCFLSHVPPSHTALILNCFGFQLGEFPAKFLGVPLITSKLSLVDCRPLLEKITTKISS 184
            KS  F++ + P+    IL  F F+LG  P K+LG+PL+T +++  D  PL+EKI  +I+S
Sbjct: 887  KSTIFMAGISPNAKTSILQQFPFELGTLPVKYLGLPLLTKRMTQSDYLPLVEKIRARITS 946

Query: 185  WTSKFLSYVGRMQLIKSVIFASQAYWSAHFILPASTMKELQTSLSRFLWKGPSMGKHGSK 364
            WT++FLS+ GR+QLIKSV+ +   +W + F LP + ++E++   S FLW GP +    +K
Sbjct: 947  WTNRFLSFAGRLQLIKSVLSSITNFWLSVFRLPKACLQEIEKMFSAFLWSGPDLNTKKAK 1006

Query: 365  VAWAKISLPFAEGRLAIKSLTNWNKSLIMMHLWKV 469
            +AW+++     EG L +K L   N+  ++  +W++
Sbjct: 1007 IAWSEVCKLKEEGGLGLKPLKEANEVSLLKLIWRI 1041


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