BLASTX nr result

ID: Panax21_contig00035438 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00035438
         (817 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containi...   189   8e-46
ref|XP_002319139.1| predicted protein [Populus trichocarpa] gi|2...   181   2e-43
ref|XP_002319140.1| predicted protein [Populus trichocarpa] gi|2...   180   4e-43
ref|XP_002525469.1| pentatricopeptide repeat-containing protein,...   171   2e-40
ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containi...   160   3e-37

>ref|XP_002275952.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Vitis vinifera]
          Length = 566

 Score =  189 bits (479), Expect = 8e-46
 Identities = 88/145 (60%), Positives = 113/145 (77%), Gaps = 1/145 (0%)
 Frame = +2

Query: 8   GCRPGHDTFIMLIRKFCRWRQLDNVYKLWTKMSEHGLDPDRSSYIVLIHGLFLNGMLEEA 187
           GC P  DT+IMLIR+FCRWRQLDNV+KLW++MSE+G+ PDRSSYIVLIHGLFLNG LEEA
Sbjct: 422 GCHPDKDTYIMLIRRFCRWRQLDNVFKLWSEMSENGVGPDRSSYIVLIHGLFLNGKLEEA 481

Query: 188 YKYNQEMKEKHLMPEAKMDEILHIWESGKQYPE-GQVELKDHQENCRQSTKETKTGLEKA 364
           YKY  EMKEK  +PE K +++L  W SGK+  +   ++LKD+Q +  QS+K+T    +  
Sbjct: 482 YKYYIEMKEKQFLPEPKTEDMLQAWISGKETADVRMIDLKDNQSDHGQSSKKTLVTSKNV 541

Query: 365 NWGRDFRRLPETRRFVRERGYSFWD 439
           + GRDFR+ PETR+  RERG+SFW+
Sbjct: 542 DLGRDFRQQPETRKVTRERGFSFWE 566


>ref|XP_002319139.1| predicted protein [Populus trichocarpa] gi|222857515|gb|EEE95062.1|
           predicted protein [Populus trichocarpa]
          Length = 518

 Score =  181 bits (459), Expect = 2e-43
 Identities = 90/155 (58%), Positives = 114/155 (73%), Gaps = 11/155 (7%)
 Frame = +2

Query: 8   GCRPGHDTFIMLIRKFCRWRQLDNVYKLWTKMSEHGLDPDRSSYIVLIHGLFLNGMLEEA 187
           GC+P +DT+IMLIRKFCRWRQL+NV+KLW +MSE+G+ PDRSSYIVLIHGLFLNG L+ A
Sbjct: 364 GCQPINDTYIMLIRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAA 423

Query: 188 YKYNQEMKEKHLMPEAKMDEILHIWESGKQYPEGQ-----------VELKDHQENCRQST 334
           +KY  EMKEK L+PE K+DE+L  W S KQ  EGQ            EL+ +Q +C QS 
Sbjct: 424 HKYYTEMKEKQLLPEPKIDEMLQTWLSNKQIAEGQTTESRSNQCQTTELRSNQLDCSQSR 483

Query: 335 KETKTGLEKANWGRDFRRLPETRRFVRERGYSFWD 439
           ++T+ G+ K +  R+F R  ETR+ VRERG SFW+
Sbjct: 484 EQTR-GIPKRSHERNFIRQAETRKVVRERGISFWE 517


>ref|XP_002319140.1| predicted protein [Populus trichocarpa] gi|222857516|gb|EEE95063.1|
           predicted protein [Populus trichocarpa]
          Length = 296

 Score =  180 bits (456), Expect = 4e-43
 Identities = 89/155 (57%), Positives = 114/155 (73%), Gaps = 11/155 (7%)
 Frame = +2

Query: 8   GCRPGHDTFIMLIRKFCRWRQLDNVYKLWTKMSEHGLDPDRSSYIVLIHGLFLNGMLEEA 187
           GC+P +DT+IMLIRKFCRWRQL+NV+KLW +MSE+G+ PDRSSYIVLIHGLFLNG L+ A
Sbjct: 142 GCQPINDTYIMLIRKFCRWRQLENVFKLWDEMSENGISPDRSSYIVLIHGLFLNGELDAA 201

Query: 188 YKYNQEMKEKHLMPEAKMDEILHIWESGKQYPEGQ-----------VELKDHQENCRQST 334
           +KY  EMKEK L+PE K+DE+L  W S KQ  EGQ            EL+ +Q +C QS 
Sbjct: 202 HKYYTEMKEKQLLPEPKIDEMLQTWLSNKQIAEGQTTESRSNQCQTTELRSNQLDCSQSR 261

Query: 335 KETKTGLEKANWGRDFRRLPETRRFVRERGYSFWD 439
           ++T+  + K +  R+F R  ETR+ VRERG+SFW+
Sbjct: 262 EQTR-DIPKRSHERNFIRQAETRKVVRERGFSFWE 295


>ref|XP_002525469.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535282|gb|EEF36959.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 581

 Score =  171 bits (433), Expect = 2e-40
 Identities = 83/144 (57%), Positives = 105/144 (72%), Gaps = 1/144 (0%)
 Frame = +2

Query: 8   GCRPGHDTFIMLIRKFCRWRQLDNVYKLWTKMSEHGLDPDRSSYIVLIHGLFLNGMLEEA 187
           GC P  DT+IMLIRKFCRWRQ D+V+KLW ++SE+GL PDRSSYIVLIHGLFLNG LEEA
Sbjct: 436 GCHPTIDTYIMLIRKFCRWRQFDDVFKLWNQISENGLGPDRSSYIVLIHGLFLNGKLEEA 495

Query: 188 YKYNQEMKEKHLMPEAKMDEILHIWESGKQYPEGQV-ELKDHQENCRQSTKETKTGLEKA 364
           YK+  +MKEK L+P+ K+DE+L  W S KQ  E Q+ E K  Q +C +   + +   ++ 
Sbjct: 496 YKFYADMKEKQLLPDPKLDEMLQTWLSNKQVAECQMTESKVDQLDCSRLGNQRRATSKRI 555

Query: 365 NWGRDFRRLPETRRFVRERGYSFW 436
           N  +DF +  E RR VRERG+SFW
Sbjct: 556 NHEKDFLQQAEIRRVVRERGFSFW 579


>ref|XP_004133786.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
           gi|449477985|ref|XP_004155184.1| PREDICTED:
           pentatricopeptide repeat-containing protein At5g15010,
           mitochondrial-like [Cucumis sativus]
          Length = 485

 Score =  160 bits (405), Expect = 3e-37
 Identities = 82/145 (56%), Positives = 97/145 (66%)
 Frame = +2

Query: 2   TKGCRPGHDTFIMLIRKFCRWRQLDNVYKLWTKMSEHGLDPDRSSYIVLIHGLFLNGMLE 181
           T GC P  DT+IMLIRKFCRWRQLDNV ++W +MSE+G+ PDRSSYIVLIHGLFLNG LE
Sbjct: 349 TMGCNPTTDTYIMLIRKFCRWRQLDNVSRIWHEMSENGISPDRSSYIVLIHGLFLNGKLE 408

Query: 182 EAYKYNQEMKEKHLMPEAKMDEILHIWESGKQYPEGQVELKDHQENCRQSTKETKTGLEK 361
           +A+KY  EMKEK L+PE K+DE+L  W +GK            QEN    + E K     
Sbjct: 409 DAHKYYLEMKEKDLLPEPKIDEVLQTWLAGKSV---------FQENPSDCSGEGKNSSLF 459

Query: 362 ANWGRDFRRLPETRRFVRERGYSFW 436
            N   DF R PE R+  R RG+SFW
Sbjct: 460 PN-KNDFHRQPEIRKVSRHRGFSFW 483


Top