BLASTX nr result

ID: Panax21_contig00035298 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00035298
         (712 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273237.1| PREDICTED: uncharacterized protein LOC100251...   180   3e-43
emb|CAN66178.1| hypothetical protein VITISV_017836 [Vitis vinifera]   178   1e-42
ref|XP_002528391.1| conserved hypothetical protein [Ricinus comm...   177   1e-42
ref|XP_002867327.1| WD-40 repeat protein family [Arabidopsis lyr...   173   3e-41
ref|NP_567858.1| transducin/WD40 domain-containing protein [Arab...   173   4e-41

>ref|XP_002273237.1| PREDICTED: uncharacterized protein LOC100251872 [Vitis vinifera]
           gi|297743697|emb|CBI36580.3| unnamed protein product
           [Vitis vinifera]
          Length = 357

 Score =  180 bits (456), Expect = 3e-43
 Identities = 86/119 (72%), Positives = 94/119 (78%)
 Frame = +2

Query: 5   GGSSGTVFAWDLRWPQQPIVLSGVGTDEAPTHSLSASDVWEVQYDTFTXXXXXXXXXXXX 184
           GGS GTVFAWDLRW QQPI+LSGVGT E  THS   S+VWEV+YD +             
Sbjct: 238 GGSLGTVFAWDLRWQQQPIILSGVGTSEVATHSPCESEVWEVKYDPYMRTSNFGNMSSSR 297

Query: 185 VLPAMICSEDGILAVIEQGEEPIELLVEQCAINSFDIDRQNPSDVICSMEWESIVILSR 361
           +LPAM+CSEDGILAV+EQGEEPIELL E CAINSFDIDRQNPSDVICS+EWESI ILSR
Sbjct: 298 ILPAMLCSEDGILAVVEQGEEPIELLAEPCAINSFDIDRQNPSDVICSLEWESIAILSR 356


>emb|CAN66178.1| hypothetical protein VITISV_017836 [Vitis vinifera]
          Length = 405

 Score =  178 bits (451), Expect = 1e-42
 Identities = 85/119 (71%), Positives = 93/119 (78%)
 Frame = +2

Query: 5   GGSSGTVFAWDLRWPQQPIVLSGVGTDEAPTHSLSASDVWEVQYDTFTXXXXXXXXXXXX 184
           GGS GTVFAWDLRW QQPI+LSGVGT E  THS   S+VWEV+YD +             
Sbjct: 286 GGSLGTVFAWDLRWQQQPIILSGVGTSEVATHSPCESEVWEVKYDPYMRTSNFGNMSSSR 345

Query: 185 VLPAMICSEDGILAVIEQGEEPIELLVEQCAINSFDIDRQNPSDVICSMEWESIVILSR 361
           +LPAM+CSEDGILAV+EQGEEPIELL E CAINSFDIDRQNP DVICS+EWESI ILSR
Sbjct: 346 ILPAMLCSEDGILAVVEQGEEPIELLAEPCAINSFDIDRQNPXDVICSLEWESIAILSR 404


>ref|XP_002528391.1| conserved hypothetical protein [Ricinus communis]
           gi|223532179|gb|EEF33984.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 354

 Score =  177 bits (450), Expect = 1e-42
 Identities = 89/119 (74%), Positives = 95/119 (79%)
 Frame = +2

Query: 5   GGSSGTVFAWDLRWPQQPIVLSGVGTDEAPTHSLSASDVWEVQYDTFTXXXXXXXXXXXX 184
           GGSSGTVFAWDLRW  QPIVLSGV  ++  THSLS SDVWEVQYD +T            
Sbjct: 236 GGSSGTVFAWDLRWKDQPIVLSGVELNDTATHSLSESDVWEVQYDCYTKSLSSNSSSSC- 294

Query: 185 VLPAMICSEDGILAVIEQGEEPIELLVEQCAINSFDIDRQNPSDVICSMEWESIVILSR 361
           +LPAMICSEDGILAVIEQGEEPIELL E CAINSFDID QNPSDVICS+EWESI I+SR
Sbjct: 295 ILPAMICSEDGILAVIEQGEEPIELLAEPCAINSFDIDCQNPSDVICSLEWESIAIISR 353


>ref|XP_002867327.1| WD-40 repeat protein family [Arabidopsis lyrata subsp. lyrata]
           gi|297313163|gb|EFH43586.1| WD-40 repeat protein family
           [Arabidopsis lyrata subsp. lyrata]
          Length = 362

 Score =  173 bits (439), Expect = 3e-41
 Identities = 85/119 (71%), Positives = 92/119 (77%)
 Frame = +2

Query: 5   GGSSGTVFAWDLRWPQQPIVLSGVGTDEAPTHSLSASDVWEVQYDTFTXXXXXXXXXXXX 184
           GGSSGTVFAWDLRWPQQPIVLSGVG  E   + LS S+VWEVQYD++T            
Sbjct: 246 GGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTKSNNISSSR--- 302

Query: 185 VLPAMICSEDGILAVIEQGEEPIELLVEQCAINSFDIDRQNPSDVICSMEWESIVILSR 361
           +LP M CSEDGIL VIEQGEEPIELL E CAINSFDIDRQNP DVICS+EWESI + SR
Sbjct: 303 ILPVMTCSEDGILGVIEQGEEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAVFSR 361


>ref|NP_567858.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]
           gi|90093296|gb|ABD85161.1| At4g30840 [Arabidopsis
           thaliana] gi|332660417|gb|AEE85817.1| transducin/WD40
           domain-containing protein [Arabidopsis thaliana]
          Length = 361

 Score =  173 bits (438), Expect = 4e-41
 Identities = 84/119 (70%), Positives = 92/119 (77%)
 Frame = +2

Query: 5   GGSSGTVFAWDLRWPQQPIVLSGVGTDEAPTHSLSASDVWEVQYDTFTXXXXXXXXXXXX 184
           GGSSGTVFAWDLRWPQQPIVLSGVG  E   + LS S+VWEVQYD++T            
Sbjct: 246 GGSSGTVFAWDLRWPQQPIVLSGVGASENINNPLSESEVWEVQYDSYTKSNVSSSR---- 301

Query: 185 VLPAMICSEDGILAVIEQGEEPIELLVEQCAINSFDIDRQNPSDVICSMEWESIVILSR 361
           +LP M CSEDGIL +IEQGEEPIELL E CAINSFDIDRQNP DVICS+EWESI + SR
Sbjct: 302 ILPVMTCSEDGILGIIEQGEEPIELLAEPCAINSFDIDRQNPQDVICSLEWESIAVFSR 360


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