BLASTX nr result

ID: Panax21_contig00035109 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00035109
         (533 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272471.1| PREDICTED: scarecrow-like protein 8-like [Vi...   119   2e-25
ref|NP_001234327.1| GRAS10 protein [Solanum lycopersicum] gi|894...   107   8e-22
ref|XP_002327470.1| GRAS family transcription factor [Populus tr...    94   1e-17
ref|XP_002513664.1| DELLA protein GAI, putative [Ricinus communi...    93   2e-17
ref|XP_002305914.1| GRAS family transcription factor [Populus tr...    86   3e-15

>ref|XP_002272471.1| PREDICTED: scarecrow-like protein 8-like [Vitis vinifera]
          Length = 614

 Score =  119 bits (299), Expect = 2e-25
 Identities = 88/199 (44%), Positives = 108/199 (54%), Gaps = 22/199 (11%)
 Frame = +2

Query: 2   NNPQGPYRSPLSGILSDQSSQIVQRRPELTGKRSL--------XXXXXXXXXXXXLGIYP 157
           NNP  PYRS + GIL D SSQIVQRRP+  GKRSL                    LG+  
Sbjct: 27  NNPHVPYRSQMPGILVDPSSQIVQRRPDWIGKRSLAEFQAQHQQQQQQQQQQQPGLGLLL 86

Query: 158 RNVKQRANYHQQANSPISPLSPPVDFSGNSLSPDXXXXXXXXXXXXXXRYGLPIFQQLRQ 337
           R+VK R   H    SPISPLS PVD+S  S+SP+              RYGLP+ QQLR 
Sbjct: 87  RSVKPRMYQHA---SPISPLS-PVDYSA-SISPE-------FPSVSAGRYGLPLLQQLRP 134

Query: 338 QQPGGMISNN-------HLSGAPFQNL------VQNQVGDSEKKMMNRLHELERQLFDDI 478
           Q     + NN       +LS   + N       +Q    +SEKK+MNRL ELE+QL DD 
Sbjct: 135 QPIA--LGNNVMAPRTANLSTVTYPNFPHNRGALQESEPESEKKIMNRLQELEKQLLDDD 192

Query: 479 D-EEQGDAASAVTNSQWSE 532
           D +++GDA S VT+S+WSE
Sbjct: 193 DVDQEGDAVSVVTHSEWSE 211


>ref|NP_001234327.1| GRAS10 protein [Solanum lycopersicum] gi|89474476|gb|ABD72965.1|
           GRAS10 [Solanum lycopersicum]
          Length = 631

 Score =  107 bits (268), Expect = 8e-22
 Identities = 83/207 (40%), Positives = 102/207 (49%), Gaps = 30/207 (14%)
 Frame = +2

Query: 2   NNPQGPYRSPLSGILSDQSSQIV-QRRPELTGKRSLXXXXXXXXXXXX------------ 142
           NN Q PY SPLSGIL D  +Q+V Q RP L GKRSL                        
Sbjct: 21  NNSQRPYSSPLSGILPDPVTQMVHQGRPNLMGKRSLAEFQQQQQLQFLQLQQQKQQQQQM 80

Query: 143 ----------LGIYPRNVKQRANYHQQANSPISPLSPPVDFSGNSLSPDXXXXXXXXXXX 292
                     +G Y RNVK R+    Q +SP+SPLSP VDFS  + +             
Sbjct: 81  MLLQQQQQQGIGFYLRNVKPRS---YQQSSPMSPLSP-VDFS-IAAAASISSSNSNVSTM 135

Query: 293 XXXRYGLPIFQQLRQQQPGGMIS---NNHLSGAPFQNLVQNQ----VGDSEKKMMNRLHE 451
              R  LP+ QQ      GG +S    N+ +G    N VQN     V +S+KKMMN L E
Sbjct: 136 MNTRQALPVLQQPANM--GGFLSPGIQNYSTGVSSLNPVQNGATIGVQESDKKMMNCLQE 193

Query: 452 LERQLFDDIDEEQGDAASAVTNSQWSE 532
           LE+QL DD DEE+GD  S +TN++WSE
Sbjct: 194 LEKQLLDDNDEEEGDTVSVITNNEWSE 220


>ref|XP_002327470.1| GRAS family transcription factor [Populus trichocarpa]
           gi|222836024|gb|EEE74445.1| GRAS family transcription
           factor [Populus trichocarpa]
          Length = 666

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 87/229 (37%), Positives = 110/229 (48%), Gaps = 52/229 (22%)
 Frame = +2

Query: 2   NNPQG--PYRSPLSGILSDQS------SQIVQRR--------------PELTGKRSLXXX 115
           NNP    PYR+  + I  DQ+       QI Q R              P L GKRSL   
Sbjct: 38  NNPSSLPPYRT--NQIFLDQNLSSHNYQQIAQHRAILPTNMNAATTTTPTLIGKRSLADF 95

Query: 116 XXXXXXXXXL-----GIYPRNVKQRANYH--QQANSPISPLSPPVDFSGNSLSPDXXXXX 274
                           +  R+VK R N +  QQ  SPIS LSP +DFS N+LSP      
Sbjct: 96  QSHPQQNLLNQAALNNLLLRSVKPRINNNLFQQNTSPISTLSP-IDFSVNNLSPQLPNLM 154

Query: 275 XXXXXXXXXRYGLPIFQQLR-----QQQP------GGMISNNHLSGAPFQNLVQNQVG-- 415
                    RY LP+ QQLR     QQ+P       G+I+NN+ +  P+ N++QNQ G  
Sbjct: 155 PQ-------RYSLPLLQQLRSHQQQQQRPMNLMSSNGVINNNNNNMMPYVNMLQNQNGGG 207

Query: 416 -------DSEKKMMNRLHELERQLFDDIDEEQ-GDAASAV--TNSQWSE 532
                  D EKKM+N+L ELE+QL DD D+ Q GD  S +  TNS+WSE
Sbjct: 208 NGVVMGQDREKKMLNQLQELEKQLLDDDDDNQEGDDVSVITNTNSEWSE 256


>ref|XP_002513664.1| DELLA protein GAI, putative [Ricinus communis]
           gi|223547572|gb|EEF49067.1| DELLA protein GAI, putative
           [Ricinus communis]
          Length = 615

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 81/203 (39%), Positives = 100/203 (49%), Gaps = 26/203 (12%)
 Frame = +2

Query: 2   NNP-QGPYRSPLSGILSDQSSQIVQRRP--------ELTGKRSLXXXXXXXXXXXXLGIY 154
           NNP Q PYR+ LS +  D +SQI  +R          L GKR+L                
Sbjct: 25  NNPSQPPYRTQLSQMFLDPASQIAHQRTTNTNLTTQSLIGKRTLADFQAHQQQNYQQQHQ 84

Query: 155 P--------RNVKQRANYHQQANSPISPLSPPVDFSGNSLSPDXXXXXXXXXXXXXXRYG 310
           P        R+VK R   H    SPIS LSP +DFSGN LSP+              RYG
Sbjct: 85  PNINPALLLRSVKPRMYQH---TSPISTLSP-IDFSGN-LSPELPSLSQ--------RYG 131

Query: 311 -LPIFQQLRQQQPGGMISNNHLSGAPFQNLVQNQVG----DSEKKMMNRLHELERQLFDD 475
            +P+ QQLR          N  SG P  N +QN       +++KKMMNRL ELE+QL DD
Sbjct: 132 GVPLLQQLRPHPI------NLGSGLPCMNTLQNHQHRGGQETQKKMMNRLQELEKQLLDD 185

Query: 476 IDEEQGDAASAVT----NSQWSE 532
            D+E+GDA S +T    NS+WSE
Sbjct: 186 NDDEEGDAVSVITSANSNSEWSE 208


>ref|XP_002305914.1| GRAS family transcription factor [Populus trichocarpa]
           gi|222848878|gb|EEE86425.1| GRAS family transcription
           factor [Populus trichocarpa]
          Length = 640

 Score = 86.3 bits (212), Expect = 3e-15
 Identities = 68/156 (43%), Positives = 85/156 (54%), Gaps = 31/156 (19%)
 Frame = +2

Query: 158 RNVKQRANYH--QQANSPISPLSPPVDFSGNSLSPDXXXXXXXXXXXXXXRYGLPIFQQL 331
           R+VK R N +  QQ  SPIS L    DFS ++LSP+              RYGLP+ QQL
Sbjct: 84  RSVKPRINNNIFQQNTSPISTL----DFSVSNLSPELPSLMSQ-------RYGLPLLQQL 132

Query: 332 R--------QQQPG------GMISNNHLSG---APFQNLVQNQVG---------DSEKKM 433
           R        QQQP       G+I+NN  S     P+ N++QNQ G         D EKKM
Sbjct: 133 RPQHHQQHQQQQPMNLISPIGIINNNRSSNNSMMPYVNMLQNQNGGGNGIVMGQDREKKM 192

Query: 434 MNRLHELERQLFDDIDEEQ-GDAASAV--TNSQWSE 532
           +N+L ELE+QL DD D+ Q GDA S +  TNS+WSE
Sbjct: 193 LNQLQELEKQLLDDDDDNQEGDAVSVITNTNSEWSE 228


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