BLASTX nr result

ID: Panax21_contig00034960 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034960
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helica...    41   4e-06

>ref|XP_002268905.1| PREDICTED: probable ATP-dependent RNA helicase DHX37-like [Vitis
           vinifera]
          Length = 1414

 Score = 40.8 bits (94), Expect(2) = 4e-06
 Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
 Frame = +3

Query: 234 RGVQFSKAGLELPISERPIKRKXXXXXXXXXXXXKRVQSRRTCISSNSSCPVISEREVLH 413
           R V+FSKAGLE+P S+RP K +             ++QS++    S++  P + +REVL 
Sbjct: 193 RAVRFSKAGLEMPHSDRPFKSQ----DGEMEPDSNKIQSKQEFDESDAMWPRMVQREVLS 248

Query: 414 YIS---------ACGSCVGGS---EASLSVKETSYENYRTS 500
             S          C + +  +     +L  KE S +NY TS
Sbjct: 249 NASISLGFTSELVCSTELAVNSRHSPTLPAKEVSEKNYDTS 289



 Score = 34.7 bits (78), Expect(2) = 4e-06
 Identities = 18/53 (33%), Positives = 32/53 (60%)
 Frame = +2

Query: 95  ESRRRRETPS*VSTKKES*RKLQEDKENELLISESVETLELKLFELEGSAVLQ 253
           E  +  +T    +++K   +KL+E+KE  LL+S+S+ETLE      +  ++LQ
Sbjct: 124 EKFKTNKTRKLSASQKRKLKKLEEEKEKSLLLSKSIETLEKYKIREDAFSLLQ 176


Top