BLASTX nr result
ID: Panax21_contig00034912
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Panax21_contig00034912 (417 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III s... 79 1e-19 dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana] 75 3e-18 ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidop... 75 4e-18 ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabi... 75 4e-18 gb|AFK37258.1| unknown [Lotus japonicus] 75 2e-17 >ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis sativus] gi|449523065|ref|XP_004168545.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like [Cucumis sativus] Length = 160 Score = 79.3 bits (194), Expect(2) = 1e-19 Identities = 36/48 (75%), Positives = 42/48 (87%) Frame = -2 Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENI 273 NFEVLDFLRS+GA KDPTRV+A + PSE+KVFDYL Q++ACNQ RE I Sbjct: 13 NFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60 Score = 41.6 bits (96), Expect(2) = 1e-19 Identities = 19/28 (67%), Positives = 25/28 (89%) Frame = -3 Query: 268 KSKKYNLAKAETLNIINVRPSSVVEIDP 185 KSK+Y+LAKAE LNIIN+RP++ VE+ P Sbjct: 66 KSKEYDLAKAEILNIINLRPTTPVELFP 93 >dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana] Length = 166 Score = 75.5 bits (184), Expect(2) = 3e-18 Identities = 37/50 (74%), Positives = 42/50 (84%) Frame = -2 Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENINK 267 NFEVLDFL SRGA KD TRVIAPIA SE+KV+DYL ++AA Q RE+INK Sbjct: 40 NFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINK 89 Score = 40.8 bits (94), Expect(2) = 3e-18 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = -3 Query: 268 KSKKYNLAKAETLNIINVRPSSVVEIDP 185 K K + LAKAE LNIIN+RPSS+VE+ P Sbjct: 93 KCKDFKLAKAEILNIINLRPSSIVELLP 120 >ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana] gi|334188590|ref|NP_001190602.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana] gi|32815911|gb|AAP88340.1| At5g62950 [Arabidopsis thaliana] gi|110743157|dbj|BAE99470.1| hypothetical protein [Arabidopsis thaliana] gi|332010294|gb|AED97677.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana] gi|332010296|gb|AED97679.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana] Length = 139 Score = 75.5 bits (184), Expect(2) = 4e-18 Identities = 37/50 (74%), Positives = 42/50 (84%) Frame = -2 Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENINK 267 NFEVLDFL SRGA KD TRVIAPIA SE+KV+DYL ++AA Q RE+INK Sbjct: 13 NFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINK 62 Score = 40.8 bits (94), Expect(2) = 4e-18 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = -3 Query: 268 KSKKYNLAKAETLNIINVRPSSVVEIDP 185 K K + LAKAE LNIIN+RPSS+VE+ P Sbjct: 66 KCKDFKLAKAEILNIINLRPSSIVELLP 93 >ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana] gi|332010295|gb|AED97678.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana] Length = 106 Score = 75.5 bits (184), Expect(2) = 4e-18 Identities = 37/50 (74%), Positives = 42/50 (84%) Frame = -2 Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENINK 267 NFEVLDFL SRGA KD TRVIAPIA SE+KV+DYL ++AA Q RE+INK Sbjct: 13 NFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINK 62 Score = 40.8 bits (94), Expect(2) = 4e-18 Identities = 19/28 (67%), Positives = 23/28 (82%) Frame = -3 Query: 268 KSKKYNLAKAETLNIINVRPSSVVEIDP 185 K K + LAKAE LNIIN+RPSS+VE+ P Sbjct: 66 KCKDFKLAKAEILNIINLRPSSIVELLP 93 >gb|AFK37258.1| unknown [Lotus japonicus] Length = 162 Score = 74.7 bits (182), Expect(2) = 2e-17 Identities = 35/50 (70%), Positives = 42/50 (84%) Frame = -2 Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENINK 267 NFEVLDFLR +GA KDPTRVIA +A SE+KV+DYL +AA NQ RE+IN+ Sbjct: 13 NFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINE 62 Score = 39.3 bits (90), Expect(2) = 2e-17 Identities = 17/26 (65%), Positives = 23/26 (88%) Frame = -3 Query: 262 KKYNLAKAETLNIINVRPSSVVEIDP 185 KK++LAKAE LNIIN+RP++ VE+ P Sbjct: 68 KKHDLAKAEVLNIINIRPAAAVEMFP 93