BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034912
         (417 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III s...    79   1e-19
dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]         75   3e-18
ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidop...    75   4e-18
ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabi...    75   4e-18
gb|AFK37258.1| unknown [Lotus japonicus]                               75   2e-17

>ref|XP_004145392.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc9-like
           [Cucumis sativus] gi|449523065|ref|XP_004168545.1|
           PREDICTED: DNA-directed RNA polymerase III subunit
           rpc9-like [Cucumis sativus]
          Length = 160

 Score = 79.3 bits (194), Expect(2) = 1e-19
 Identities = 36/48 (75%), Positives = 42/48 (87%)
 Frame = -2

Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENI 273
           NFEVLDFLRS+GA KDPTRV+A + PSE+KVFDYL Q++ACNQ RE I
Sbjct: 13  NFEVLDFLRSKGAAKDPTRVLAKVLPSEYKVFDYLNQTSACNQTREAI 60



 Score = 41.6 bits (96), Expect(2) = 1e-19
 Identities = 19/28 (67%), Positives = 25/28 (89%)
 Frame = -3

Query: 268 KSKKYNLAKAETLNIINVRPSSVVEIDP 185
           KSK+Y+LAKAE LNIIN+RP++ VE+ P
Sbjct: 66  KSKEYDLAKAEILNIINLRPTTPVELFP 93


>dbj|BAB10864.1| unnamed protein product [Arabidopsis thaliana]
          Length = 166

 Score = 75.5 bits (184), Expect(2) = 3e-18
 Identities = 37/50 (74%), Positives = 42/50 (84%)
 Frame = -2

Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENINK 267
           NFEVLDFL SRGA KD TRVIAPIA SE+KV+DYL ++AA  Q RE+INK
Sbjct: 40  NFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINK 89



 Score = 40.8 bits (94), Expect(2) = 3e-18
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -3

Query: 268 KSKKYNLAKAETLNIINVRPSSVVEIDP 185
           K K + LAKAE LNIIN+RPSS+VE+ P
Sbjct: 93  KCKDFKLAKAEILNIINLRPSSIVELLP 120


>ref|NP_201100.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
           gi|334188590|ref|NP_001190602.1| RNA polymerase II,
           Rpb4, core protein [Arabidopsis thaliana]
           gi|32815911|gb|AAP88340.1| At5g62950 [Arabidopsis
           thaliana] gi|110743157|dbj|BAE99470.1| hypothetical
           protein [Arabidopsis thaliana]
           gi|332010294|gb|AED97677.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
           gi|332010296|gb|AED97679.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
          Length = 139

 Score = 75.5 bits (184), Expect(2) = 4e-18
 Identities = 37/50 (74%), Positives = 42/50 (84%)
 Frame = -2

Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENINK 267
           NFEVLDFL SRGA KD TRVIAPIA SE+KV+DYL ++AA  Q RE+INK
Sbjct: 13  NFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINK 62



 Score = 40.8 bits (94), Expect(2) = 4e-18
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -3

Query: 268 KSKKYNLAKAETLNIINVRPSSVVEIDP 185
           K K + LAKAE LNIIN+RPSS+VE+ P
Sbjct: 66  KCKDFKLAKAEILNIINLRPSSIVELLP 93


>ref|NP_001078783.1| RNA polymerase II, Rpb4, core protein [Arabidopsis thaliana]
           gi|332010295|gb|AED97678.1| RNA polymerase II, Rpb4,
           core protein [Arabidopsis thaliana]
          Length = 106

 Score = 75.5 bits (184), Expect(2) = 4e-18
 Identities = 37/50 (74%), Positives = 42/50 (84%)
 Frame = -2

Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENINK 267
           NFEVLDFL SRGA KD TRVIAPIA SE+KV+DYL ++AA  Q RE+INK
Sbjct: 13  NFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINK 62



 Score = 40.8 bits (94), Expect(2) = 4e-18
 Identities = 19/28 (67%), Positives = 23/28 (82%)
 Frame = -3

Query: 268 KSKKYNLAKAETLNIINVRPSSVVEIDP 185
           K K + LAKAE LNIIN+RPSS+VE+ P
Sbjct: 66  KCKDFKLAKAEILNIINLRPSSIVELLP 93


>gb|AFK37258.1| unknown [Lotus japonicus]
          Length = 162

 Score = 74.7 bits (182), Expect(2) = 2e-17
 Identities = 35/50 (70%), Positives = 42/50 (84%)
 Frame = -2

Query: 416 NFEVLDFLRSRGAGKDPTRVIAPIAPSEFKVFDYLEQSAACNQMRENINK 267
           NFEVLDFLR +GA KDPTRVIA +A SE+KV+DYL  +AA NQ RE+IN+
Sbjct: 13  NFEVLDFLRGKGASKDPTRVIAKVAQSEYKVYDYLVNTAASNQTRESINE 62



 Score = 39.3 bits (90), Expect(2) = 2e-17
 Identities = 17/26 (65%), Positives = 23/26 (88%)
 Frame = -3

Query: 262 KKYNLAKAETLNIINVRPSSVVEIDP 185
           KK++LAKAE LNIIN+RP++ VE+ P
Sbjct: 68  KKHDLAKAEVLNIINIRPAAAVEMFP 93