BLASTX nr result

ID: Panax21_contig00034819 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034819
         (762 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003598915.1| F-box family-9 [Medicago truncatula] gi|3554...    86   9e-15
ref|XP_003614868.1| F-box/FBD/LRR-repeat protein [Medicago trunc...    82   1e-13
ref|XP_002300080.1| f-box family protein [Populus trichocarpa] g...    81   2e-13
ref|XP_003519928.1| PREDICTED: putative F-box/LRR-repeat protein...    80   5e-13
ref|XP_003598147.1| F-box family-3 [Medicago truncatula] gi|3554...    80   5e-13

>ref|XP_003598915.1| F-box family-9 [Medicago truncatula] gi|355487963|gb|AES69166.1|
           F-box family-9 [Medicago truncatula]
          Length = 383

 Score = 85.9 bits (211), Expect = 9e-15
 Identities = 58/158 (36%), Positives = 85/158 (53%), Gaps = 18/158 (11%)
 Frame = -1

Query: 711 DRISILPDELIHHILSFIDAKFVVRTSILSKRWKQIWKTVPHLKFNF----CRRLSFSKF 544
           DR+S+LP+ ++ HILSF+D K  V+T ILSK WK +WK +P LK  F         F+KF
Sbjct: 15  DRLSVLPECILLHILSFLDPKEAVQTCILSKSWKNLWKYLPILKLTFRHFKKNPKGFTKF 74

Query: 543 VWYLFSHRNQQSDVLDIELIC-GRTEDPKVD-LVKFVIVH------------LERFPLSI 406
           V  + S RN  + +  ++  C GR E   ++ ++K+   H            + +FPLS 
Sbjct: 75  VSQILSLRNDSTALHTLDFHCRGRLELHILERILKYAFSHNVQRLGVDLSCNIPQFPLSF 134

Query: 405 FRSTSLKKLKLAGDYFSILEYAPDTSWSLPALTTLDLR 292
           F   +L  L L   +F++    PD S  LPALT L L+
Sbjct: 135 FSCHTLTSLDLRIHFFTLTNLFPD-SLDLPALTNLSLQ 171


>ref|XP_003614868.1| F-box/FBD/LRR-repeat protein [Medicago truncatula]
           gi|355516203|gb|AES97826.1| F-box/FBD/LRR-repeat protein
           [Medicago truncatula]
          Length = 258

 Score = 82.0 bits (201), Expect = 1e-13
 Identities = 58/157 (36%), Positives = 87/157 (55%), Gaps = 18/157 (11%)
 Frame = -1

Query: 711 DRISILPDELIHHILSFIDAKFVVRTSILSKRWKQIWKTVPHLKF---NFCRRL-SFSKF 544
           DR+S LPD ++ HILSF+D K  V+T ILS RW  +WK +  +K    +F + L  F+KF
Sbjct: 17  DRVSNLPDCVLLHILSFLDTKHAVQTCILSPRWNNLWKHLSSIKLSSRHFPKNLKGFTKF 76

Query: 543 VWYLFSHRNQQSDVLDIELICGRTEDPKV--DLVKFVIVH----LE--------RFPLSI 406
           V ++FS R+  + +L ++     T DP++   ++K+   H    LE        +FP S 
Sbjct: 77  VSHVFSLRDDTTSLLALDFQREGTMDPRILKIILKYAFAHNVQQLEVDVKCFNPQFPPSF 136

Query: 405 FRSTSLKKLKLAGDYFSILEYAPDTSWSLPALTTLDL 295
           F   +L  LKL  D++S     P TS +LP +T L L
Sbjct: 137 FSCHTLTTLKLTIDHYSHQNLFP-TSPNLPQITNLSL 172


>ref|XP_002300080.1| f-box family protein [Populus trichocarpa]
           gi|222847338|gb|EEE84885.1| f-box family protein
           [Populus trichocarpa]
          Length = 351

 Score = 81.3 bits (199), Expect = 2e-13
 Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 25/187 (13%)
 Frame = -1

Query: 711 DRISILPDELIHHILSFIDAKFVVRTSILSKRWKQIWKTVP--HLKFNFCRRLS-FSKFV 541
           DR+S LP+ +IHHILSF+DAK+ V+TS+L+K W+ +W +V   HL  N  RRL  F KFV
Sbjct: 15  DRLSNLPNHIIHHILSFLDAKYAVQTSVLAKGWRNLWTSVHVLHLNSNSFRRLGRFKKFV 74

Query: 540 --------------WYLFSHRNQQSDVLDIELICGRTEDPKVDLVKFVIVHLERFPLS-- 409
                          +LF++R +  D L   +I   +      LV  + +  +R P+S  
Sbjct: 75  VAVLNKLNHNSTAGTFLFTYRGRIDDYLKKRVIYFASFHGVGHLV--LDLGCKRPPVSQA 132

Query: 408 IFRSTSLKKLKLAGDYFSILEYAPDTSWSLPALTTLDLRYC--NLPKSCFS----LPALA 247
           +    + K +KL    F+       TS+    LTTL L++C  +L  +CF     LP L+
Sbjct: 133 LLNCQTFKTIKLKNATFT-------TSFGFSKLTTLHLKHCLFSLVSNCFDFSDCLPNLS 185

Query: 246 TLCMYNC 226
           +L +  C
Sbjct: 186 SLSLLGC 192


>ref|XP_003519928.1| PREDICTED: putative F-box/LRR-repeat protein At5g25860-like
           [Glycine max]
          Length = 513

 Score = 80.1 bits (196), Expect = 5e-13
 Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 29/193 (15%)
 Frame = -1

Query: 711 DRISILPDELIHHILSFIDAKFVVRTSILSKRWKQIWKTVPHLKFNF-----CRRLSFSK 547
           DRIS LPD ++ HI+SF+D K  V+T ILSKRWK + K +  L F       C++  F K
Sbjct: 165 DRISELPDCILMHIMSFLDTKDAVQTCILSKRWKDLCKCLTDLTFRSPFRCKCKKY-FRK 223

Query: 546 FVWYLFSHRNQQSDVLDIELICGRTEDPKVD-LVKFVIVH----------------LERF 418
           FV ++ S RN    +L++++     E  ++D ++K+V+ H                L+  
Sbjct: 224 FVSWVLSSRNDSCSLLNVDINNSCIETEELDRVIKYVMFHNVQKLTMYIGLSSRPNLDSL 283

Query: 417 PLSIFRSTSLKKLKLAGDYFSILEYAPDTSWSLPALTTLDLRYCN---LPKSC----FSL 259
           PL +F S SL  LKL   +          S  LPALT+L L+  N   +   C     + 
Sbjct: 284 PL-VFCSKSLTSLKLCLMHDPSSRIVLPKSLHLPALTSLHLQCVNFTAIDNDCAEPFSNC 342

Query: 258 PALATLCMYNCKL 220
             L TL ++NC++
Sbjct: 343 HLLNTLFLWNCEM 355


>ref|XP_003598147.1| F-box family-3 [Medicago truncatula] gi|355487195|gb|AES68398.1|
           F-box family-3 [Medicago truncatula]
          Length = 530

 Score = 80.1 bits (196), Expect = 5e-13
 Identities = 75/237 (31%), Positives = 110/237 (46%), Gaps = 39/237 (16%)
 Frame = -1

Query: 762 RNSMASVQKKVRIGADVDRISILPDELIHHILSFIDAKFVVRTSILSKRWKQIWKTVPHL 583
           R S    Q++  I  + DR+S L D L+HHILSF++AK  V+T ILSKRW  +WKT+  L
Sbjct: 8   RQSKRQQQRREDIEIEEDRMSELSDNLLHHILSFLNAKEAVQTCILSKRWINLWKTLSTL 67

Query: 582 KF---NFCRRLSFSKFVWYLFSHRNQQSDVLDIELICGRTEDPKVDL----VKFVIVH-- 430
                +F    SF +F+  L S R+  +D+  +      T     DL    +++   H  
Sbjct: 68  TLSVDHFSTEESFEQFISMLLSLRDHSTDIHSLVFHFQWTHVLSRDLYLKTIEYAFSHNV 127

Query: 429 ---------LERFPLSIFRSTSLKKLKLAG-------DYFSILEYAPDTSWSLPALTTLD 298
                    ++  P   F S +L  L L G        Y+ I  +    S++LPALTTL 
Sbjct: 128 QHFQILYTAVKHLPSCFFSSHTLTSLNLTGKDLMVPSGYYQI--FPSSHSFNLPALTTLY 185

Query: 297 LRY----CN--------LPKSCFSLPALATLCMYNCKLPKSTWDLPALTT--LELTV 169
           L++    CN         P S F++  L TL +  C L  +  +L    T  L LT+
Sbjct: 186 LKHLSFSCNDDDDGSVVDPFSTFNM--LNTLIIDRCVLRGNAQNLRISCTKLLNLTI 240


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