BLASTX nr result

ID: Panax21_contig00034807 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034807
         (563 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002867770.1| hypothetical protein ARALYDRAFT_329378 [Arab...   112   5e-23
ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana] gi|1...   106   2e-21
ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata sub...   106   2e-21
dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana]           103   1e-20
ref|XP_003610528.1| F-box family protein [Medicago truncatula] g...   103   2e-20

>ref|XP_002867770.1| hypothetical protein ARALYDRAFT_329378 [Arabidopsis lyrata subsp.
           lyrata] gi|297313606|gb|EFH44029.1| hypothetical protein
           ARALYDRAFT_329378 [Arabidopsis lyrata subsp. lyrata]
          Length = 406

 Score =  112 bits (279), Expect = 5e-23
 Identities = 56/137 (40%), Positives = 81/137 (59%), Gaps = 7/137 (5%)
 Frame = +1

Query: 103 VLCNYYLSYIDIWVMNDYGVKNSWFKLISVARPYDIRSFEYLKPIAYSKSGDQVLLEQEG 282
           ++CN+  SY+D+W+M +Y V+ SW KL  V +P  + SF++++P+ YSK  D++LLE   
Sbjct: 270 LMCNHEFSYVDVWIMKEYKVEGSWSKLFRVPKPKSVESFDFMRPLLYSKERDKILLEINN 329

Query: 283 AKLLWYDLKSKTVKNIRILDMANFSEAYVFVGSLVKLTGG-------RTDCVXXXXXXXX 441
           AKL+W+DLKSK  + +RI D  +   A + V SLV    G       R + +        
Sbjct: 330 AKLVWFDLKSKRFRTLRIKDCDSSYSAELLVSSLVLGCKGDPTEVMRRKERLAREDKIMQ 389

Query: 442 XXXXRDDFLSKGFKLAL 492
               RDDFLSKGFKL L
Sbjct: 390 ERNKRDDFLSKGFKLVL 406


>ref|NP_192993.2| F-box protein CPR30 [Arabidopsis thaliana]
           gi|145333023|ref|NP_001078377.1| F-box protein CPR30
           [Arabidopsis thaliana]
           gi|142989747|sp|Q9SU30.2|CPR30_ARATH RecName: Full=F-box
           protein CPR30; AltName: Full=Protein CONSTITUTIVE
           EXPRESSER OF PR GENES 30 gi|332657747|gb|AEE83147.1|
           F-box protein CPR30 [Arabidopsis thaliana]
           gi|332657748|gb|AEE83148.1| F-box protein CPR30
           [Arabidopsis thaliana]
          Length = 413

 Score =  106 bits (265), Expect = 2e-21
 Identities = 54/140 (38%), Positives = 80/140 (57%), Gaps = 10/140 (7%)
 Frame = +1

Query: 103 VLCNYYLSYIDIWVMNDYGVKNSWFKLISVARPYDIRSFEYLKPIAYSKSGDQVLLEQEG 282
           ++CNY  SY+D+W+M +Y V++SW K+ +V +P  ++SF Y++P+ YSK   +VLLE   
Sbjct: 274 LMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNN 333

Query: 283 AKLLWYDLKSKTVKNIRILDMANFSEAYVFVGSLVKLTGGRTDCV----------XXXXX 432
            KL+W+DL+SK +  +RI D  +   A + V SLV    G  + +               
Sbjct: 334 TKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLVLGCKGDLNNIKYRKEQQAKEAREAK 393

Query: 433 XXXXXXXRDDFLSKGFKLAL 492
                  RDDFLSKGFKL L
Sbjct: 394 IMQNTKRRDDFLSKGFKLVL 413


>ref|XP_002872660.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297318497|gb|EFH48919.1| F-box family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 414

 Score =  106 bits (265), Expect = 2e-21
 Identities = 54/140 (38%), Positives = 79/140 (56%), Gaps = 10/140 (7%)
 Frame = +1

Query: 103 VLCNYYLSYIDIWVMNDYGVKNSWFKLISVARPYDIRSFEYLKPIAYSKSGDQVLLEQEG 282
           ++CNY   Y+D+W+M +Y V++SW K+ +V +P  ++SF Y++P+ YSK  D+VLLE   
Sbjct: 275 LMCNYDQEYVDVWMMKEYNVRSSWTKVFTVQKPKSVKSFAYMRPLVYSKDKDKVLLELNN 334

Query: 283 AKLLWYDLKSKTVKNIRILDMANFSEAYVFVGSLVKLTGGRTDCV----------XXXXX 432
            KL+W+D+ SK +  +RI D  +   A V V SLV    G  + +               
Sbjct: 335 TKLVWFDVVSKKMSTLRIKDCPSSYSAEVVVSSLVLGCKGDLENIKYRKEQEAKEAREAK 394

Query: 433 XXXXXXXRDDFLSKGFKLAL 492
                  RDDFLSKGFKL L
Sbjct: 395 MMQNTKRRDDFLSKGFKLVL 414


>dbj|BAF01202.1| hypothetical protein [Arabidopsis thaliana]
          Length = 413

 Score =  103 bits (258), Expect = 1e-20
 Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 10/140 (7%)
 Frame = +1

Query: 103 VLCNYYLSYIDIWVMNDYGVKNSWFKLISVARPYDIRSFEYLKPIAYSKSGDQVLLEQEG 282
           ++CNY  SY+D+W+M +Y V++SW K+ +V +P  ++SF Y++P+ YSK   +VLLE   
Sbjct: 274 LMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNN 333

Query: 283 AKLLWYDLKSKTVKNIRILDMANFSEAYVFVGSLVKLTGGRTDCV----------XXXXX 432
            KL+W+DL+SK +  +RI D  +   A + V SLV    G  + +               
Sbjct: 334 TKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLVLGCKGDLNNIKYRKEQQAKEAREAK 393

Query: 433 XXXXXXXRDDFLSKGFKLAL 492
                  R DFLSKGFKL L
Sbjct: 394 IMQNTKRRGDFLSKGFKLVL 413


>ref|XP_003610528.1| F-box family protein [Medicago truncatula]
           gi|355511583|gb|AES92725.1| F-box family protein
           [Medicago truncatula]
          Length = 392

 Score =  103 bits (256), Expect = 2e-20
 Identities = 54/123 (43%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
 Frame = +1

Query: 133 DIWVMNDYGVKNSWFKLISVARPYDIRSFEYLKPIAYSKSGDQVLLEQEGAKLLWYDLKS 312
           D+WVM +YG  +SW K+ +V +P D++  + LKP+ YS++GD+VL EQ+  KL WY+L S
Sbjct: 270 DVWVMREYGSHDSWCKMFTVGQPRDVKLMKSLKPLGYSRNGDKVLFEQDSKKLCWYNLAS 329

Query: 313 KTVKNIRILDMANFSEAYVFVGSLVK---LTGGRTDCVXXXXXXXXXXXXRDDFLSKGFK 483
           K V  +RI  + N  E  V VGSLVK   +                    RDDFLSKGFK
Sbjct: 330 KDVSWVRISGIPNSIEGTVCVGSLVKPSLMMNRSVQSKKQKLVEEKNKKKRDDFLSKGFK 389

Query: 484 LAL 492
           L L
Sbjct: 390 LTL 392


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