BLASTX nr result
ID: Panax21_contig00034805
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00034805
(966 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 339 e-138
dbj|BAA22288.1| polyprotein [Oryza australiensis] 335 e-137
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 329 e-134
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 329 e-134
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 326 e-133
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 339 bits (869), Expect(2) = e-138
Identities = 161/216 (74%), Positives = 189/216 (87%)
Frame = +3
Query: 318 QTAFLNGNLLEDVYMTQPEGFVTPKDAGKVCKL*RSIYGLKQASRSWNLRFDEAVKEFGF 497
+TAFLNGNL E VYMTQPEGF P+ A KVCKL RSIYGLKQASRSWNLRF+EA+KEF F
Sbjct: 555 KTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDF 614
Query: 498 IKNEDEPCVYKKVSGSHIVFLVLYVDDILIIGNDIPSLQAVKTWLGKCFSMKDLGDAAYI 677
I+NE+EPCVYKK SGS + FLVLYVDDIL++GNDIP LQ+VKTWLG CFSMKD+G+AAYI
Sbjct: 615 IRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYI 674
Query: 678 LGIKIYRDRSRKMLGLSQSTYIDKVLKRFSMQEAKRGNLPVTHGVKISKAQCPKSQDDEE 857
LGI+IYRDR K++GLSQ TYIDKVL RF+M ++K+G +P++HG+ +SK QCP + D+ E
Sbjct: 675 LGIRIYRDRLNKIIGLSQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERE 734
Query: 858 RMRKIPYASAIGSIMYAMICTRPDVSYALSMTSRYQ 965
RM KIPYASAIGSIMYAM+ TRPDV+ ALSMTSRYQ
Sbjct: 735 RMSKIPYASAIGSIMYAMLYTRPDVACALSMTSRYQ 770
Score = 179 bits (454), Expect(2) = e-138
Identities = 82/105 (78%), Positives = 93/105 (88%)
Frame = +1
Query: 7 GPDSERWLEAMRSEMDSMYTNQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGRLV 186
GPDS++WLEA +SEM+SM N+VWTLVD P+GVKPI CKW+FKKK DMDGN+Q YK LV
Sbjct: 451 GPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLV 510
Query: 187 AKGYKQVQGVDYDETFSPVAMVKSIRILLAIAAFYDYEIWQMDVK 321
AKGYKQV G+DYDET+SPVAM+KSIRILLA AA YDYEIWQMDVK
Sbjct: 511 AKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVK 555
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 335 bits (859), Expect(2) = e-137
Identities = 158/216 (73%), Positives = 191/216 (88%)
Frame = +3
Query: 318 QTAFLNGNLLEDVYMTQPEGFVTPKDAGKVCKL*RSIYGLKQASRSWNLRFDEAVKEFGF 497
+TAFLNGNL EDVYM QP+GFV P+ GK+CKL +SIYGLKQASRSWN+RFDE +K FGF
Sbjct: 908 KTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGF 967
Query: 498 IKNEDEPCVYKKVSGSHIVFLVLYVDDILIIGNDIPSLQAVKTWLGKCFSMKDLGDAAYI 677
IKNE+E CVYKKVSGS IVFL+LYVDDIL+IGNDIP L++VK+ L FSMKDLG+AAYI
Sbjct: 968 IKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYI 1027
Query: 678 LGIKIYRDRSRKMLGLSQSTYIDKVLKRFSMQEAKRGNLPVTHGVKISKAQCPKSQDDEE 857
LGI+IYRDRS++++GLSQSTYIDKVLKRF+M ++K+G LP++HG+ +SK QCP++ D+
Sbjct: 1028 LGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERN 1087
Query: 858 RMRKIPYASAIGSIMYAMICTRPDVSYALSMTSRYQ 965
+M +PYASAIGSIMYAM+CTRPDVSYALS TSRYQ
Sbjct: 1088 KMGMVPYASAIGSIMYAMLCTRPDVSYALSATSRYQ 1123
Score = 181 bits (459), Expect(2) = e-137
Identities = 83/107 (77%), Positives = 95/107 (88%)
Frame = +1
Query: 1 MNGPDSERWLEAMRSEMDSMYTNQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGR 180
M G DS +WL AM+SE++SMY NQVW LVDPP+GVK I CKW+FKKK DMDGNV YK R
Sbjct: 802 MVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKAR 861
Query: 181 LVAKGYKQVQGVDYDETFSPVAMVKSIRILLAIAAFYDYEIWQMDVK 321
LVAKG+KQ+QGVDYDETFSPVAM+KSIRI+LAIAA++DYEIWQMDVK
Sbjct: 862 LVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVK 908
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 329 bits (844), Expect(2) = e-134
Identities = 157/216 (72%), Positives = 190/216 (87%)
Frame = +3
Query: 318 QTAFLNGNLLEDVYMTQPEGFVTPKDAGKVCKL*RSIYGLKQASRSWNLRFDEAVKEFGF 497
+TAFLNGNL EDVYMTQP+GFV P+ A K+CKL +SIY LKQASRSWN+RFDE VK GF
Sbjct: 857 KTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGF 916
Query: 498 IKNEDEPCVYKKVSGSHIVFLVLYVDDILIIGNDIPSLQAVKTWLGKCFSMKDLGDAAYI 677
+KNE+EPCVYKK+SGS +VFL+LYVDDIL+IGNDIP L++VKT L FSMKDLG+AAYI
Sbjct: 917 VKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYI 976
Query: 678 LGIKIYRDRSRKMLGLSQSTYIDKVLKRFSMQEAKRGNLPVTHGVKISKAQCPKSQDDEE 857
LGI+IYRDRS++++GLSQSTYIDKVLKRF+MQ++K+G LP++HG+ + K QCP++ D+
Sbjct: 977 LGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERN 1036
Query: 858 RMRKIPYASAIGSIMYAMICTRPDVSYALSMTSRYQ 965
+M IPYASAIGSIMYAM+CTR DVSYALS TSRYQ
Sbjct: 1037 KMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQ 1072
Score = 177 bits (448), Expect(2) = e-134
Identities = 79/107 (73%), Positives = 95/107 (88%)
Frame = +1
Query: 1 MNGPDSERWLEAMRSEMDSMYTNQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGR 180
M GPD+E+WL AM+SE++SM+ NQVW LVDPP+GVK I CKW+FKK TD+DG V Y R
Sbjct: 751 MVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNAR 810
Query: 181 LVAKGYKQVQGVDYDETFSPVAMVKSIRILLAIAAFYDYEIWQMDVK 321
LVAKG++Q+QGVDYDETFSPVAM+KSIRI+LAIAA++DYEIWQMDVK
Sbjct: 811 LVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVK 857
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 329 bits (844), Expect(2) = e-134
Identities = 157/216 (72%), Positives = 190/216 (87%)
Frame = +3
Query: 318 QTAFLNGNLLEDVYMTQPEGFVTPKDAGKVCKL*RSIYGLKQASRSWNLRFDEAVKEFGF 497
+TAFLNGNL EDVYMTQP+GFV P+ A K+CKL +SIY LKQASRSWN+RFDE VK GF
Sbjct: 770 KTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLKQASRSWNIRFDEVVKALGF 829
Query: 498 IKNEDEPCVYKKVSGSHIVFLVLYVDDILIIGNDIPSLQAVKTWLGKCFSMKDLGDAAYI 677
+KNE+EPCVYKK+SGS +VFL+LYVDDIL+IGNDIP L++VKT L FSMKDLG+AAYI
Sbjct: 830 VKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKYSFSMKDLGEAAYI 889
Query: 678 LGIKIYRDRSRKMLGLSQSTYIDKVLKRFSMQEAKRGNLPVTHGVKISKAQCPKSQDDEE 857
LGI+IYRDRS++++GLSQSTYIDKVLKRF+MQ++K+G LP++HG+ + K QCP++ D+
Sbjct: 890 LGIRIYRDRSKRLIGLSQSTYIDKVLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERN 949
Query: 858 RMRKIPYASAIGSIMYAMICTRPDVSYALSMTSRYQ 965
+M IPYASAIGSIMYAM+CTR DVSYALS TSRYQ
Sbjct: 950 KMSVIPYASAIGSIMYAMLCTRLDVSYALSATSRYQ 985
Score = 177 bits (448), Expect(2) = e-134
Identities = 79/107 (73%), Positives = 95/107 (88%)
Frame = +1
Query: 1 MNGPDSERWLEAMRSEMDSMYTNQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGR 180
M GPD+E+WL AM+SE++SM+ NQVW LVDPP+GVK I CKW+FKK TD+DG V Y R
Sbjct: 664 MVGPDTEKWLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWIFKKMTDVDGTVHIYNAR 723
Query: 181 LVAKGYKQVQGVDYDETFSPVAMVKSIRILLAIAAFYDYEIWQMDVK 321
LVAKG++Q+QGVDYDETFSPVAM+KSIRI+LAIAA++DYEIWQMDVK
Sbjct: 724 LVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMDVK 770
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 326 bits (836), Expect(2) = e-133
Identities = 155/216 (71%), Positives = 189/216 (87%)
Frame = +3
Query: 318 QTAFLNGNLLEDVYMTQPEGFVTPKDAGKVCKL*RSIYGLKQASRSWNLRFDEAVKEFGF 497
+TAFLNGN EDVYMTQP+GFV + A +CKL +SIYGLKQASRSWN+RFDE VK GF
Sbjct: 838 KTAFLNGNHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGLKQASRSWNIRFDELVKALGF 897
Query: 498 IKNEDEPCVYKKVSGSHIVFLVLYVDDILIIGNDIPSLQAVKTWLGKCFSMKDLGDAAYI 677
+KNE+EPCVYKK+SGS +VFL+LYVDDIL+IGNDIP L++VKT L FSMKDLG+AAYI
Sbjct: 898 LKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVKTSLKNSFSMKDLGEAAYI 957
Query: 678 LGIKIYRDRSRKMLGLSQSTYIDKVLKRFSMQEAKRGNLPVTHGVKISKAQCPKSQDDEE 857
LGI+IYRDRS++++GLSQSTYIDK+LKRF+MQ++K+G LP++HG+ + K QCP++ D+
Sbjct: 958 LGIRIYRDRSKRLIGLSQSTYIDKMLKRFNMQDSKKGFLPMSHGINLGKNQCPQTTDERN 1017
Query: 858 RMRKIPYASAIGSIMYAMICTRPDVSYALSMTSRYQ 965
+M IPYASAIGSIMYAM+CTRPDVSYALS TSRYQ
Sbjct: 1018 KMSVIPYASAIGSIMYAMLCTRPDVSYALSATSRYQ 1053
Score = 174 bits (442), Expect(2) = e-133
Identities = 81/107 (75%), Positives = 96/107 (89%)
Frame = +1
Query: 1 MNGPDSERWLEAMRSEMDSMYTNQVWTLVDPPEGVKPIGCKWVFKKKTDMDGNVQTYKGR 180
M G DSE+ L AM+SE++SM+ NQVW LVDPP+GVK I CKWVFKKKTD+DGNV YK R
Sbjct: 732 MVGLDSEKCLGAMKSEIESMHVNQVWNLVDPPDGVKAIECKWVFKKKTDVDGNVHIYKAR 791
Query: 181 LVAKGYKQVQGVDYDETFSPVAMVKSIRILLAIAAFYDYEIWQMDVK 321
LVAKG++Q+QGVDYDETFSPVAM+KSIRI+LAIAA++DYEIWQM+VK
Sbjct: 792 LVAKGFRQIQGVDYDETFSPVAMLKSIRIVLAIAAYFDYEIWQMEVK 838