BLASTX nr result

ID: Panax21_contig00034784 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034784
         (414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002298418.1| f-box family protein [Populus trichocarpa] g...    57   2e-06
emb|CBI28933.3| unnamed protein product [Vitis vinifera]               54   1e-05
emb|CAN68677.1| hypothetical protein VITISV_041940 [Vitis vinifera]    54   1e-05

>ref|XP_002298418.1| f-box family protein [Populus trichocarpa]
           gi|222845676|gb|EEE83223.1| f-box family protein
           [Populus trichocarpa]
          Length = 363

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 1/90 (1%)
 Frame = +1

Query: 19  EDGCSIWVMREYGVTESWTKLFTMDCHRVFKWVADFRKKGDV-IGSKNNYLFSYDPHAKT 195
           E  CS+WVM+EYGV ESWTKLF ++     + +  FR+  +V +  ++  L SYDP+   
Sbjct: 261 ETSCSVWVMKEYGVGESWTKLFNIEHVEGIQRLVAFRENNEVLLAGEDGELISYDPNTNN 320

Query: 196 IQDYGIPGTTEWWFSNASYVASYTESLYLL 285
             D  + G  +     + Y+ ++ ESL LL
Sbjct: 321 -WDCKLFGDVD-----SFYLDTFVESLVLL 344


>emb|CBI28933.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 13  RYEDGCSIWVMREYGVTESWTKLFTMDCHRVFKWVADFRKKGD-VIGSKNNYLFSYDPHA 189
           R  D C IWVM EYGV  SWTK FT         + DF   G+ V+ +KN  L + DP+ 
Sbjct: 293 RCNDNCDIWVMDEYGVASSWTKRFTFCLDVEILILLDFLDNGEVVVQNKNGGLVACDPNG 352

Query: 190 KTIQDYGIPG 219
             I+D  + G
Sbjct: 353 GKIRDLKVAG 362


>emb|CAN68677.1| hypothetical protein VITISV_041940 [Vitis vinifera]
          Length = 485

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = +1

Query: 13  RYEDGCSIWVMREYGVTESWTKLFTMDCHRVFKWVADFRKKGD-VIGSKNNYLFSYDPHA 189
           R  D C IWVM EYGV  SWTK FT         + DF   G+ V+ +KN  L + DP+ 
Sbjct: 355 RCNDNCDIWVMDEYGVASSWTKRFTFCLDVEILILLDFLDNGEVVVQNKNGGLVACDPNG 414

Query: 190 KTIQDYGIPG 219
             I+D  + G
Sbjct: 415 GKIRDLKVAG 424


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