BLASTX nr result

ID: Panax21_contig00034752 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034752
         (396 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003532941.1| PREDICTED: protein FAR1-RELATED SEQUENCE 6-l...   122   4e-26
ref|XP_003598064.1| FAR1-related protein [Medicago truncatula] g...   115   3e-24
gb|ABD33026.2| Cyclin-like F-box; FAR1; Zinc finger, SWIM-type [...   114   8e-24
ref|XP_003606229.1| FAR1-related protein [Medicago truncatula] g...   109   3e-22
gb|ABA95414.1| transposon protein, putative, unclassified [Oryza...   102   3e-20

>ref|XP_003532941.1| PREDICTED: protein FAR1-RELATED SEQUENCE 6-like [Glycine max]
          Length = 669

 Score =  122 bits (305), Expect = 4e-26
 Identities = 59/131 (45%), Positives = 84/131 (64%)
 Frame = -1

Query: 393 EIDADTKEVIFHVYFNEDEWEVQCNCCLFEFRGILCRHAFSVLMMIKKIKILPSKYILPR 214
           +I    K V F+V FNE+++EVQC C LFEF+GILCRH  S+L +I+K + +PSKY+   
Sbjct: 527 KIQEAIKYVTFNVQFNEEDFEVQCECHLFEFKGILCRHILSLLKLIRKTESVPSKYVFSH 586

Query: 213 WSKDSKRRYTFIKCIYDELNGNPEAQRYDKLQTSFYEVASMASKIEESCMTVMTVLDKLK 34
           W KD KR++T ++  Y +L  NPEA+R DK+  +F EVA M    +     VM  +D LK
Sbjct: 587 WRKDLKRKHTLVRSSYGDLIANPEAERLDKMCNAFQEVACMGVNTDVDFKKVMKWIDDLK 646

Query: 33  EKWSLNVSSSG 1
            + S   +S+G
Sbjct: 647 VELSCKKTSTG 657


>ref|XP_003598064.1| FAR1-related protein [Medicago truncatula]
           gi|355487112|gb|AES68315.1| FAR1-related protein
           [Medicago truncatula]
          Length = 429

 Score =  115 bits (289), Expect = 3e-24
 Identities = 57/123 (46%), Positives = 75/123 (60%)
 Frame = -1

Query: 375 KEVIFHVYFNEDEWEVQCNCCLFEFRGILCRHAFSVLMMIKKIKILPSKYILPRWSKDSK 196
           K+++F V FNE ++ ++C C LFEF+GILCRH   VL +I K   +PS YIL RW KD K
Sbjct: 156 KDIVFMVLFNEKDFMLKCTCHLFEFKGILCRHILCVLKLIGKTDFVPSNYILARWRKDIK 215

Query: 195 RRYTFIKCIYDELNGNPEAQRYDKLQTSFYEVASMASKIEESCMTVMTVLDKLKEKWSLN 16
           RRY  IKC +D L G  E QR DK   +FYE AS     E+  + VM  +  +K +   N
Sbjct: 216 RRYILIKCGFDNLAGKTELQRVDKACDAFYEFASTRINSEDDLVKVMNWIQNMKIELPCN 275

Query: 15  VSS 7
            +S
Sbjct: 276 ETS 278


>gb|ABD33026.2| Cyclin-like F-box; FAR1; Zinc finger, SWIM-type [Medicago truncatula]
          Length = 1116

 Score =  114 bits (285), Expect = 8e-24
 Identities = 59/124 (47%), Positives = 78/124 (62%)
 Frame = -1

Query: 375  KEVIFHVYFNEDEWEVQCNCCLFEFRGILCRHAFSVLMMIKKIKILPSKYILPRWSKDSK 196
            K+  F V FNE ++E+QC CCLFEF+GILCRH   VL +  K + +PS YIL RW KD K
Sbjct: 852  KDTRFRVIFNEKDFEIQCACCLFEFKGILCRHILCVLQLTGKTESVPSCYILSRWRKDIK 911

Query: 195  RRYTFIKCIYDELNGNPEAQRYDKLQTSFYEVASMASKIEESCMTVMTVLDKLKEKWSLN 16
            RR+T IKC +D   GN E Q   K   +FYEV S+    E+  + VM  +++LK + +  
Sbjct: 912  RRHTLIKCGFD---GNVELQLVGKACDAFYEVVSVGIHTEDDLLKVMNRINELKIELNCE 968

Query: 15   VSSS 4
             SSS
Sbjct: 969  GSSS 972


>ref|XP_003606229.1| FAR1-related protein [Medicago truncatula]
           gi|355507284|gb|AES88426.1| FAR1-related protein
           [Medicago truncatula]
          Length = 446

 Score =  109 bits (272), Expect = 3e-22
 Identities = 59/126 (46%), Positives = 75/126 (59%)
 Frame = -1

Query: 381 DTKEVIFHVYFNEDEWEVQCNCCLFEFRGILCRHAFSVLMMIKKIKILPSKYILPRWSKD 202
           DTK   F   FNE ++E+QC CCLFEF+GILCRH   VL +  K + + S YIL RW  D
Sbjct: 257 DTKT--FSWLFNEKDFEIQCACCLFEFKGILCRHILCVLQLTGKTESVSSCYILSRWRND 314

Query: 201 SKRRYTFIKCIYDELNGNPEAQRYDKLQTSFYEVASMASKIEESCMTVMTVLDKLKEKWS 22
            K R+T IKC +D L GN E Q   K   +FYEV SM    E+  + VM  +++LK   +
Sbjct: 315 IKWRHTLIKCGFDHLAGNVELQLVGKACDAFYEVVSMGIHTEDDLLKVMNRINELKIDLN 374

Query: 21  LNVSSS 4
              SSS
Sbjct: 375 CEGSSS 380


>gb|ABA95414.1| transposon protein, putative, unclassified [Oryza sativa Japonica
           Group]
          Length = 862

 Score =  102 bits (254), Expect = 3e-20
 Identities = 52/110 (47%), Positives = 71/110 (64%)
 Frame = -1

Query: 357 VYFNEDEWEVQCNCCLFEFRGILCRHAFSVLMMIKKIKILPSKYILPRWSKDSKRRYTFI 178
           V FN+++ ++ C C  FEFRGILCRH  S+L ++  I+ +PSKYIL RW KD KR++TFI
Sbjct: 529 VLFNQEDCDLHCECRHFEFRGILCRHILSILPLVD-IEKVPSKYILQRWRKDFKRKHTFI 587

Query: 177 KCIYDELNGNPEAQRYDKLQTSFYEVASMASKIEESCMTVMTVLDKLKEK 28
           KC YD+    P  +R+D L   F EVA   S  +  C  VM  L++L+ K
Sbjct: 588 KCSYDDQLDTPIVRRFDTLCKRFNEVAENGSVSDALCNLVMDGLNELQIK 637


Top