BLASTX nr result

ID: Panax21_contig00034528 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034528
         (604 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003632321.1| PREDICTED: CST complex subunit STN1-like [Vi...   173   2e-41
ref|XP_002307601.1| predicted protein [Populus trichocarpa] gi|2...   166   3e-39
ref|XP_002524745.1| conserved hypothetical protein [Ricinus comm...   145   7e-33
ref|XP_003612019.1| CST complex subunit STN1 [Medicago truncatul...   139   5e-31
gb|AFK40847.1| unknown [Medicago truncatula]                          134   2e-29

>ref|XP_003632321.1| PREDICTED: CST complex subunit STN1-like [Vitis vinifera]
           gi|147810449|emb|CAN65336.1| hypothetical protein
           VITISV_023849 [Vitis vinifera]
          Length = 165

 Score =  173 bits (438), Expect = 2e-41
 Identities = 84/119 (70%), Positives = 102/119 (85%), Gaps = 4/119 (3%)
 Frame = -3

Query: 347 THVKLLAFDFLSLTSIPS----DPTTFSRRGTHTPISRAETVGIITTRDLKPNKFLRFTI 180
           THVKLLAFD LSLT  PS    DP +FSRRGT  P+SRAET+G +T+R+LKP+KFL+FT+
Sbjct: 8   THVKLLAFDLLSLTQTPSPSSSDPISFSRRGT--PLSRAETLGTVTSRELKPHKFLKFTV 65

Query: 179 DDGTGCIPCILWLNHLTSPYFSRRNPSDVRLIAEVAAGFASLIQLGVVARVRGRITGYR 3
           DDGTGC+PC+LWLNHL+SPYFSRRNP+DVRLIA++A   AS ++LGV+ RVRGRIT YR
Sbjct: 66  DDGTGCVPCVLWLNHLSSPYFSRRNPADVRLIADLAEYQASEVKLGVLVRVRGRITAYR 124


>ref|XP_002307601.1| predicted protein [Populus trichocarpa] gi|222857050|gb|EEE94597.1|
           predicted protein [Populus trichocarpa]
          Length = 166

 Score =  166 bits (420), Expect = 3e-39
 Identities = 82/119 (68%), Positives = 100/119 (84%), Gaps = 4/119 (3%)
 Frame = -3

Query: 347 THVKLLAFDFLSLTSIPS----DPTTFSRRGTHTPISRAETVGIITTRDLKPNKFLRFTI 180
           THVKLLAFD LSL   PS    DP TF+R+  +T ISR E +G+IT+R+LKPNKFL+FTI
Sbjct: 8   THVKLLAFDLLSLAQTPSFSTYDPITFTRK--NTTISRTEILGVITSRELKPNKFLKFTI 65

Query: 179 DDGTGCIPCILWLNHLTSPYFSRRNPSDVRLIAEVAAGFASLIQLGVVARVRGRITGYR 3
           DDGTGC+ C+LWLN LTSPYFSRRNP++V+LIA++AA FAS I++G+VARVRGRI GYR
Sbjct: 66  DDGTGCVTCVLWLNQLTSPYFSRRNPANVKLIADMAAHFASEIKIGLVARVRGRIAGYR 124


>ref|XP_002524745.1| conserved hypothetical protein [Ricinus communis]
           gi|223535929|gb|EEF37588.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 166

 Score =  145 bits (365), Expect = 7e-33
 Identities = 76/118 (64%), Positives = 89/118 (75%), Gaps = 4/118 (3%)
 Frame = -3

Query: 344 HVKLLAFDFLSLTSIP----SDPTTFSRRGTHTPISRAETVGIITTRDLKPNKFLRFTID 177
           HVKLLA D +SLT  P    SDP +FS    +   SRAE +GI+T+ + KP+KFL+FTID
Sbjct: 9   HVKLLALDLVSLTQTPPFSPSDPISFSH--ANKSFSRAEILGIVTSCEHKPHKFLKFTID 66

Query: 176 DGTGCIPCILWLNHLTSPYFSRRNPSDVRLIAEVAAGFASLIQLGVVARVRGRITGYR 3
           DGTGC+ CILWLN LTSPYFSRR+   VRLIA  A  FASLI++GVVARVRGRIT YR
Sbjct: 67  DGTGCVSCILWLNQLTSPYFSRRSTPAVRLIASTATHFASLIKIGVVARVRGRITSYR 124


>ref|XP_003612019.1| CST complex subunit STN1 [Medicago truncatula]
           gi|355513354|gb|AES94977.1| CST complex subunit STN1
           [Medicago truncatula]
          Length = 185

 Score =  139 bits (349), Expect = 5e-31
 Identities = 72/116 (62%), Positives = 89/116 (76%), Gaps = 1/116 (0%)
 Frame = -3

Query: 347 THVKLLAFDFLSLTSIPSDPTTFSRRGTHTPISRAETVGIITTRDLKPNKFLRFTIDDGT 168
           THVKLLAFD L+LT   S   +F+R     PI+RAETVG IT RD KP KFLRF IDDGT
Sbjct: 15  THVKLLAFDLLTLTPPISPNHSFTRNSI--PITRAETVGTITLRDHKPFKFLRFAIDDGT 72

Query: 167 GCIPCILWLNHLTSPYFS-RRNPSDVRLIAEVAAGFASLIQLGVVARVRGRITGYR 3
           GCIPCILWLNH+TSP+ + RR+P D+ L+A+ AA  A ++++G VARVRGR+T Y+
Sbjct: 73  GCIPCILWLNHMTSPHLARRRSPQDLCLLADAAARSAEVVKVGNVARVRGRVTEYK 128


>gb|AFK40847.1| unknown [Medicago truncatula]
          Length = 179

 Score =  134 bits (336), Expect = 2e-29
 Identities = 71/116 (61%), Positives = 86/116 (74%), Gaps = 1/116 (0%)
 Frame = -3

Query: 347 THVKLLAFDFLSLTSIPSDPTTFSRRGTHTPISRAETVGIITTRDLKPNKFLRFTIDDGT 168
           THVKLLAFD L+LT   S   +F+R      I+RAETVG IT RD KP KFLRF IDDGT
Sbjct: 15  THVKLLAFDLLTLTPPISPNHSFTRNSIS--ITRAETVGTITLRDHKPFKFLRFAIDDGT 72

Query: 167 GCIPCILWLNHLTSPYFS-RRNPSDVRLIAEVAAGFASLIQLGVVARVRGRITGYR 3
           GCIPCILWLNH+TSP+ + RR+P D+ L+A+ AA  A + + G VARVRGR+T Y+
Sbjct: 73  GCIPCILWLNHMTSPHLARRRSPQDLCLLADAAARSAEVAKFGNVARVRGRVTEYK 128


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