BLASTX nr result
ID: Panax21_contig00034409
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00034409
(566 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22750.3| unnamed protein product [Vitis vinifera] 111 7e-23
ref|XP_002510793.1| conserved hypothetical protein [Ricinus comm... 86 3e-15
ref|XP_002318221.1| predicted protein [Populus trichocarpa] gi|2... 79 7e-13
ref|XP_002862640.1| hypothetical protein ARALYDRAFT_497372 [Arab... 67 2e-09
ref|NP_200042.4| shortage in chiasmata 1 [Arabidopsis thaliana] ... 67 2e-09
>emb|CBI22750.3| unnamed protein product [Vitis vinifera]
Length = 1591
Score = 111 bits (278), Expect = 7e-23
Identities = 83/198 (41%), Positives = 106/198 (53%), Gaps = 16/198 (8%)
Frame = +2
Query: 5 KPCDFQRSKGHVMSEEKENQPVLGNDALFSQNRRLDTATMIKFDGSNNNCSGNLRKDFIG 184
KP D Q KG M E + + ND L + R D AT D NNN +L DF G
Sbjct: 1257 KPNDSQVLKGSEMLYEVKKPGLSLNDKLLGERRGSDAATR---DWHNNNNPEDLHNDFKG 1313
Query: 185 EVTDIDDS-CPSVEHSSIANSLDFSHLLAEMERDPAVRYSRTARKLSFGNNSLPTFPTAA 361
EV D++DS + SSIA S FS L+ E+E DPA S+T+R+LSF N+S PTFPTAA
Sbjct: 1314 EVIDLNDSFLIGEDFSSIAKSSRFSPLVLELEEDPAAGKSKTSRRLSFSNSSHPTFPTAA 1373
Query: 362 EISCDSDAL-----NRQNSGEQIFQHSD----KGLNMLLEQKDTLPKAVRNS------HS 496
EI+ +SD +Q+ G+ I + D KG + QK L ++ S S
Sbjct: 1374 EINSNSDIWTTLKDQKQSLGKGIVEFEDTEFGKGDLPMKHQKQLLEGSMHRSAKDFCGPS 1433
Query: 497 FLEKDVPHYGGTPLSKAI 550
F EKD HY GTPLS A+
Sbjct: 1434 FQEKDT-HYSGTPLSNAL 1450
>ref|XP_002510793.1| conserved hypothetical protein [Ricinus communis]
gi|223549908|gb|EEF51395.1| conserved hypothetical
protein [Ricinus communis]
Length = 1318
Score = 86.3 bits (212), Expect = 3e-15
Identities = 69/193 (35%), Positives = 104/193 (53%), Gaps = 9/193 (4%)
Frame = +2
Query: 14 DFQRSKGHVMSEEKENQPVLGNDALFSQNRRLDTATMIKFDGSNNNCSGNLRKDFIGEVT 193
D Q S+G ++ +E + + L QN + T+ D +N S NL +D +GEV
Sbjct: 1009 DCQSSRGPLVLDEIKMSRSYLHHNLLDQNDGSEM-TIENVDWNNTRNSYNLHEDVLGEVI 1067
Query: 194 DIDDSCPSVEHSSIANSLDFSHLLAEMERDPAVRYSRTARKLSFGNNSLPTFPTAAEISC 373
D+ DS + NS FS L E E + R S+ ARKLSFG N PTFPTAA I+
Sbjct: 1068 DLSDSLGK-DVPPTGNSTFFSTWLPETE--DSTRKSKAARKLSFGRNRHPTFPTAAAINS 1124
Query: 374 DSDALNRQNS-GEQIFQHSD-KGLNMLLEQ-----KDTLPK-AVRNSHSF-LEKDVPHYG 526
+S+ + +N G + Q++D +M L++ KD L + + RN+ + +++ H+G
Sbjct: 1125 NSELRSSENDHGHSLQQNNDYSDCDMPLKRPKEIVKDVLRQGSTRNAKALPFREEMSHFG 1184
Query: 527 GTPLSKAIRFSEP 565
GTPLSKAI + P
Sbjct: 1185 GTPLSKAIHSANP 1197
>ref|XP_002318221.1| predicted protein [Populus trichocarpa] gi|222858894|gb|EEE96441.1|
predicted protein [Populus trichocarpa]
Length = 1337
Score = 78.6 bits (192), Expect = 7e-13
Identities = 73/212 (34%), Positives = 103/212 (48%), Gaps = 25/212 (11%)
Frame = +2
Query: 5 KPCDFQRSKGHVMSEEKENQPVLGNDALFSQNR--RLDTATMIKFDGSN--NNCSGNLRK 172
KP K ++ +++ + ND QNR ++ +K D N + + NL +
Sbjct: 993 KPLYSGNFKDPLIRDDRRQPRLPLNDIFLGQNRASEINIKKELKLDSGNPCKSNANNLHE 1052
Query: 173 DFIGEVTDIDDSCPSVEH--SSIANSLDFSHLL--AEMERDPAVRYSRTARKLSFGNNSL 340
F GEV D+ D S+E +SIANS FS + ++E+D A R S+ AR+LSFG NS
Sbjct: 1053 YFRGEVIDLTDDPVSLEKDVASIANSTYFSPWMPDTDIEQDSA-RKSKAARRLSFGKNSH 1111
Query: 341 PTFPTAAE----------ISCDSDALNRQNSGEQIFQHSD-----KGLNMLLEQKDTLPK 475
P PTAAE I D L QN G+ I K LLE+ TL
Sbjct: 1112 PNNPTAAEKNSCPDLWTPIESDRQRL-PQNRGDPIIDDKHEKVPVKPRKNLLEEAFTLRA 1170
Query: 476 AVRNSHSFLEKDVPHYG--GTPLSKAIRFSEP 565
A +++ E+++ H G GTPLSKAI + P
Sbjct: 1171 AGKSTRFPFEEEISHCGGSGTPLSKAIHSAHP 1202
>ref|XP_002862640.1| hypothetical protein ARALYDRAFT_497372 [Arabidopsis lyrata subsp.
lyrata] gi|297308283|gb|EFH38898.1| hypothetical protein
ARALYDRAFT_497372 [Arabidopsis lyrata subsp. lyrata]
Length = 1581
Score = 67.4 bits (163), Expect = 2e-09
Identities = 51/169 (30%), Positives = 77/169 (45%), Gaps = 9/169 (5%)
Frame = +2
Query: 80 DALFSQNRRLDTATMIKFDGSNNNCSGNLRKDFIGEVTDIDDSCPSVEHSSIANSLDFSH 259
D SQNR M FD +N S N D+ GEV D D + F+
Sbjct: 1290 DKFKSQNRGCKFPVMGDFDLHDNRNSENFIADYKGEVIDRADKFLEEDFPPSPVYNRFAP 1349
Query: 260 LLAEMERDPAVRYSRTARKLSFGNNSLPTFPTAAEISCDSDAL------NRQNSGE---Q 412
++++++ + R S++ARKLSF + P FP A+I S+ N N+
Sbjct: 1350 IVSDVDEEELPRKSKSARKLSFFGSLQPNFPKTADIDLSSERFASEKDSNNDNNASLRGY 1409
Query: 413 IFQHSDKGLNMLLEQKDTLPKAVRNSHSFLEKDVPHYGGTPLSKAIRFS 559
+ + K LLE+ T AV + +++ H+GG+PLS AIR S
Sbjct: 1410 VDNYPAKRQRTLLEEVLTRRSAVPTTELPFREEISHFGGSPLSNAIRSS 1458
>ref|NP_200042.4| shortage in chiasmata 1 [Arabidopsis thaliana]
gi|332008813|gb|AED96196.1| shortage in chiasmata 1
[Arabidopsis thaliana]
Length = 1594
Score = 67.4 bits (163), Expect = 2e-09
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 9/169 (5%)
Frame = +2
Query: 80 DALFSQNRRLDTATMIKFDGSNNNCSGNLRKDFIGEVTDIDDSCPSVEHSSIANSLDFSH 259
D SQNR M F+ +N S N D+ GEV D D + F+
Sbjct: 1304 DKFMSQNRGCKFPVMRDFNLHDNRNSENFIADYKGEVIDRADKYLEEDFPPSPGYNRFAR 1363
Query: 260 LLAEMERDPAVRYSRTARKLSFGNNSLPTFPTAAEISCDSDAL-----NRQNSGEQIFQH 424
+++++ + R S+++RKLSF + P FP AA+I S+ ++ ++ + +
Sbjct: 1364 IVSDVNEEELPRKSKSSRKLSFFGSLQPNFPKAADIDSSSERYATEKDSKYDNNTSLRGY 1423
Query: 425 SD----KGLNMLLEQKDTLPKAVRNSHSFLEKDVPHYGGTPLSKAIRFS 559
+D K LLE+ T AV + +++ H+GG+PLS AIR S
Sbjct: 1424 ADNYPAKRQRTLLEEVLTRRSAVPTTELPFREEISHFGGSPLSNAIRSS 1472