BLASTX nr result

ID: Panax21_contig00034368 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034368
         (444 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319537.1| predicted protein [Populus trichocarpa] gi|2...   174   5e-42
ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat...   165   4e-39
ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containi...   165   4e-39
ref|XP_002512380.1| pentatricopeptide repeat-containing protein,...   164   7e-39
ref|XP_002280795.2| PREDICTED: uncharacterized protein LOC100263...   161   6e-38

>ref|XP_002319537.1| predicted protein [Populus trichocarpa] gi|222857913|gb|EEE95460.1|
           predicted protein [Populus trichocarpa]
          Length = 266

 Score =  174 bits (442), Expect = 5e-42
 Identities = 82/112 (73%), Positives = 94/112 (83%), Gaps = 4/112 (3%)
 Frame = +1

Query: 121 HCNG----NETLSTSSAYSVLGVSPNCSLIDLKAAFRAKVKEFHPDARRDGEDSDTMIRR 288
           HC G    +  LSTSSAY+VLG+ P CS   +KAAFRAKVK+FHPD  +DG+ SD MIRR
Sbjct: 51  HCLGRAEEDSPLSTSSAYTVLGIKPGCSAAAIKAAFRAKVKQFHPDLNKDGKVSDLMIRR 110

Query: 289 VIQAYEILSNYSKPEIIESECLDPFEKPECEAFDIFINEFLCVGKGCPYSCV 444
           VIQAYE+LSN+S+PEIIE ECLDPFE+PECEAFDIF+NE LCVGKGCPYSCV
Sbjct: 111 VIQAYEMLSNFSRPEIIERECLDPFEEPECEAFDIFVNEVLCVGKGCPYSCV 162


>ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  165 bits (417), Expect = 4e-39
 Identities = 76/107 (71%), Positives = 90/107 (84%), Gaps = 2/107 (1%)
 Frame = +1

Query: 130 GNETLSTS--SAYSVLGVSPNCSLIDLKAAFRAKVKEFHPDARRDGEDSDTMIRRVIQAY 303
           G +TL +   +AY +LG+ P CS  +LKAAFRAKVK+FHPD  R+G DSD+MIRRVIQAY
Sbjct: 623 GEDTLLSGPMAAYRLLGLDPTCSESELKAAFRAKVKQFHPDVNRNGNDSDSMIRRVIQAY 682

Query: 304 EILSNYSKPEIIESECLDPFEKPECEAFDIFINEFLCVGKGCPYSCV 444
           E+LS+YS+ E IE ECLDPFE PECEAFD+F+NEFLCVGKGCPYSCV
Sbjct: 683 EMLSSYSRTEFIERECLDPFENPECEAFDVFVNEFLCVGKGCPYSCV 729


>ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  165 bits (417), Expect = 4e-39
 Identities = 76/107 (71%), Positives = 90/107 (84%), Gaps = 2/107 (1%)
 Frame = +1

Query: 130 GNETLSTS--SAYSVLGVSPNCSLIDLKAAFRAKVKEFHPDARRDGEDSDTMIRRVIQAY 303
           G +TL +   +AY +LG+ P CS  +LKAAFRAKVK+FHPD  R+G DSD+MIRRVIQAY
Sbjct: 628 GEDTLLSGPMAAYRLLGLDPTCSESELKAAFRAKVKQFHPDVNRNGNDSDSMIRRVIQAY 687

Query: 304 EILSNYSKPEIIESECLDPFEKPECEAFDIFINEFLCVGKGCPYSCV 444
           E+LS+YS+ E IE ECLDPFE PECEAFD+F+NEFLCVGKGCPYSCV
Sbjct: 688 EMLSSYSRTEFIERECLDPFENPECEAFDVFVNEFLCVGKGCPYSCV 734


>ref|XP_002512380.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223548341|gb|EEF49832.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 736

 Score =  164 bits (415), Expect = 7e-39
 Identities = 76/100 (76%), Positives = 86/100 (86%)
 Frame = +1

Query: 145 STSSAYSVLGVSPNCSLIDLKAAFRAKVKEFHPDARRDGEDSDTMIRRVIQAYEILSNYS 324
           S+S+A+ VLGV P CS  +LKAAFRAKVK+FHPD  RD +  DTMIRRVIQAYEILSN+S
Sbjct: 533 SSSAAHMVLGVDPGCSAAELKAAFRAKVKQFHPDVNRDRKFPDTMIRRVIQAYEILSNFS 592

Query: 325 KPEIIESECLDPFEKPECEAFDIFINEFLCVGKGCPYSCV 444
           + EIIESECLDPF+ PECEAFDIF+NE LC GKGCPYSCV
Sbjct: 593 RSEIIESECLDPFDNPECEAFDIFVNEVLCAGKGCPYSCV 632


>ref|XP_002280795.2| PREDICTED: uncharacterized protein LOC100263014 [Vitis vinifera]
           gi|296088328|emb|CBI36773.3| unnamed protein product
           [Vitis vinifera]
          Length = 265

 Score =  161 bits (407), Expect = 6e-38
 Identities = 75/101 (74%), Positives = 87/101 (86%)
 Frame = +1

Query: 142 LSTSSAYSVLGVSPNCSLIDLKAAFRAKVKEFHPDARRDGEDSDTMIRRVIQAYEILSNY 321
           LS SSAY+VLGV P+CS  +LKAAFRAKVK+FHPD  ++G DSD MIR VIQAYE+LS  
Sbjct: 61  LSDSSAYAVLGVDPSCSAPELKAAFRAKVKQFHPDVNKEGGDSDKMIRLVIQAYELLSCC 120

Query: 322 SKPEIIESECLDPFEKPECEAFDIFINEFLCVGKGCPYSCV 444
           S+ EIIE ECLDPF++PECEAFD+F+NE LCVGKGCPYSCV
Sbjct: 121 SRSEIIERECLDPFDEPECEAFDLFVNEVLCVGKGCPYSCV 161


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