BLASTX nr result

ID: Panax21_contig00034325 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034325
         (389 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002321191.1| predicted protein [Populus trichocarpa] gi|2...   144   7e-33
ref|XP_002269904.1| PREDICTED: F-box protein SNE [Vitis vinifera...   138   5e-31
ref|XP_002530225.1| F-box protein SNE, putative [Ricinus communi...   135   3e-30
emb|CBI28427.3| unnamed protein product [Vitis vinifera]              130   1e-28
ref|XP_003544480.1| PREDICTED: F-box protein SNE-like [Glycine max]   122   4e-26

>ref|XP_002321191.1| predicted protein [Populus trichocarpa] gi|222861964|gb|EEE99506.1|
           predicted protein [Populus trichocarpa]
          Length = 153

 Score =  144 bits (363), Expect = 7e-33
 Identities = 73/105 (69%), Positives = 83/105 (79%), Gaps = 3/105 (2%)
 Frame = -2

Query: 307 KQKRLKFHINDHIDVLIEILKRLDGRSLSVAASVCRLWCSITRNDSLWEHLCFRQM-XXX 131
           K+KR KF INDH+D+L+EILKRLDGRSL V+A VCRLWC+I RNDSLWEHLCFR +    
Sbjct: 6   KEKRPKFCINDHVDILLEILKRLDGRSLCVSACVCRLWCTIARNDSLWEHLCFRHVSPPP 65

Query: 130 XXXXXXXXVALGGYRRLYMLCVRPVLSRLGRQR--GESDLVRRVW 2
                   VALGGY+RLYM+CVRPVLSRLGR R  G+SD VRRVW
Sbjct: 66  SSGVRPVVVALGGYKRLYMVCVRPVLSRLGRLRLAGDSDRVRRVW 110


>ref|XP_002269904.1| PREDICTED: F-box protein SNE [Vitis vinifera]
           gi|147772267|emb|CAN67350.1| hypothetical protein
           VITISV_018090 [Vitis vinifera]
          Length = 170

 Score =  138 bits (347), Expect = 5e-31
 Identities = 70/116 (60%), Positives = 83/116 (71%), Gaps = 9/116 (7%)
 Frame = -2

Query: 322 MPHEHKQKRLKFHINDHIDVLIEILKRLDGRSLSVAASVCRLWCSITRNDSLWEHLCFRQ 143
           M H  K+K+ +F IND+ D+L+EILKRLDGRSL VAA VCRLW S+T NDSLWEHLCFR 
Sbjct: 14  MGHGEKEKKPRFFINDNTDILMEILKRLDGRSLGVAACVCRLWRSVTWNDSLWEHLCFRH 73

Query: 142 MXXXXXXXXXXXVALGGYRRLYMLCVRPVLSRLGRQR---------GESDLVRRVW 2
           +           VALGGYRRLYM+C+RPVLSRLG+ +         G+SDLV RVW
Sbjct: 74  VSPPPPGVRPVVVALGGYRRLYMMCLRPVLSRLGQMKRGLGGSGGGGDSDLVGRVW 129


>ref|XP_002530225.1| F-box protein SNE, putative [Ricinus communis]
           gi|223530272|gb|EEF32172.1| F-box protein SNE, putative
           [Ricinus communis]
          Length = 155

 Score =  135 bits (341), Expect = 3e-30
 Identities = 69/107 (64%), Positives = 80/107 (74%), Gaps = 6/107 (5%)
 Frame = -2

Query: 304 QKRLKFHINDHIDVLIEILKRLDGRSLSVAASVCRLWCSITRNDSLWEHLCFRQ-MXXXX 128
           QKR KF INDH+D+L+EILKRLDGRSL VAA VC LWC+I RNDSLWE+LCFR  +    
Sbjct: 8   QKRHKFSINDHVDILVEILKRLDGRSLGVAACVCNLWCTIARNDSLWENLCFRHVISPPP 67

Query: 127 XXXXXXXVALGGYRRLYMLCVRPVLSRLGRQ-----RGESDLVRRVW 2
                  VALGGY+RLYM+CVRPVLS+LGR+      GESD  RR+W
Sbjct: 68  SGVRPVIVALGGYKRLYMVCVRPVLSQLGRRFRLSSGGESDRARRMW 114


>emb|CBI28427.3| unnamed protein product [Vitis vinifera]
          Length = 1221

 Score =  130 bits (327), Expect = 1e-28
 Identities = 70/120 (58%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
 Frame = -2

Query: 388  SLRTL-FATFKNMLQLYENEQLIMPHEHKQKRLKFHINDHIDVLIEILKRLDGRSLSVAA 212
            SLRTL F      L      Q  M H  K+K+ +F IND+ D+L+EILKRLDGRSL VAA
Sbjct: 1073 SLRTLSFCITMVQLLCRSKFQRGMGHGEKEKKPRFFINDNTDILMEILKRLDGRSLGVAA 1132

Query: 211  SVCRLWCSITRNDSLWEHLCFRQMXXXXXXXXXXXVALGGYRRLYMLCVRPVLSRLGRQR 32
             VCRLW S+T NDSLWEHLCFR +           VALGGYRRLYM+C+RPVLSRLG+ +
Sbjct: 1133 CVCRLWRSVTWNDSLWEHLCFRHVSPPPPGVRPVVVALGGYRRLYMMCLRPVLSRLGQMK 1192


>ref|XP_003544480.1| PREDICTED: F-box protein SNE-like [Glycine max]
          Length = 154

 Score =  122 bits (305), Expect = 4e-26
 Identities = 69/115 (60%), Positives = 82/115 (71%), Gaps = 6/115 (5%)
 Frame = -2

Query: 328 LIMPHEHK---QKRLKFHINDHIDVLIEILKRLDGRSLSVAASVCRLWCSITRN-DSLWE 161
           ++   +H+   +KR +F IND+ID+L EILKRLDG SL VAA VCRLWCS+TRN DSLWE
Sbjct: 1   MVQQQQHRREQEKRPRFFINDNIDILREILKRLDGPSLGVAACVCRLWCSLTRNDDSLWE 60

Query: 160 HLCFRQM-XXXXXXXXXXXVALGGYRRLYMLCVRPVLSRLGRQRGESDLVR-RVW 2
           HLCFR +            VALGGY+RLYM+CVRPVLSRL    G S+ VR RVW
Sbjct: 61  HLCFRHVSSPPTASVRAVVVALGGYKRLYMVCVRPVLSRL----GNSERVRKRVW 111


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