BLASTX nr result

ID: Panax21_contig00034242 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034242
         (484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI31832.3| unnamed protein product [Vitis vinifera]              140   8e-32
ref|XP_002279586.1| PREDICTED: F-box protein PP2-A13 [Vitis vini...   140   8e-32
emb|CBI34744.3| unnamed protein product [Vitis vinifera]              135   4e-30
ref|XP_002282844.1| PREDICTED: F-box protein PP2-A12 [Vitis vini...   135   4e-30
ref|XP_002322448.1| f-box family protein [Populus trichocarpa] g...   133   2e-29

>emb|CBI31832.3| unnamed protein product [Vitis vinifera]
          Length = 231

 Score =  140 bits (354), Expect = 8e-32
 Identities = 67/120 (55%), Positives = 82/120 (68%), Gaps = 5/120 (4%)
 Frame = +3

Query: 3   EFEFPAGAYSLFFRLQLGKR-----QGMSNPKKVHGWDIKPVRFKLSNGEHAAIAHECYL 167
           EFEFPAG YS+FFR+QLGK      + + N ++VHGWDIKPVRF+LS  +      +CYL
Sbjct: 112 EFEFPAGTYSIFFRIQLGKTSRRLGRKVCNIERVHGWDIKPVRFQLSTSDGQHALSQCYL 171

Query: 168 SDDQAGKWLHYHVGDFLVENSYVPTKINFSMAQIDCTHTKAGLSLDSVFICPTHHAHDVR 347
            +   GKW+HYH GDF+VE      K+ FSM QIDCTHTK GL LDSVFICP  +   V+
Sbjct: 172 CEP--GKWVHYHAGDFMVEKPNTSMKVKFSMTQIDCTHTKGGLCLDSVFICPAEYRDRVK 229


>ref|XP_002279586.1| PREDICTED: F-box protein PP2-A13 [Vitis vinifera]
          Length = 279

 Score =  140 bits (354), Expect = 8e-32
 Identities = 67/120 (55%), Positives = 82/120 (68%), Gaps = 5/120 (4%)
 Frame = +3

Query: 3   EFEFPAGAYSLFFRLQLGKR-----QGMSNPKKVHGWDIKPVRFKLSNGEHAAIAHECYL 167
           EFEFPAG YS+FFR+QLGK      + + N ++VHGWDIKPVRF+LS  +      +CYL
Sbjct: 160 EFEFPAGTYSIFFRIQLGKTSRRLGRKVCNIERVHGWDIKPVRFQLSTSDGQHALSQCYL 219

Query: 168 SDDQAGKWLHYHVGDFLVENSYVPTKINFSMAQIDCTHTKAGLSLDSVFICPTHHAHDVR 347
            +   GKW+HYH GDF+VE      K+ FSM QIDCTHTK GL LDSVFICP  +   V+
Sbjct: 220 CEP--GKWVHYHAGDFMVEKPNTSMKVKFSMTQIDCTHTKGGLCLDSVFICPAEYRDRVK 277


>emb|CBI34744.3| unnamed protein product [Vitis vinifera]
          Length = 309

 Score =  135 bits (339), Expect = 4e-30
 Identities = 69/114 (60%), Positives = 84/114 (73%), Gaps = 7/114 (6%)
 Frame = +3

Query: 3   EFEFPAGAYSLFFRLQLG---KRQG--MSNPKKVHGWDIKPVRFKL--SNGEHAAIAHEC 161
           +F FPAG YS+FFRLQLG   KR G  + NP+ VHGWDIKPVRF+L  S+G+HA    +C
Sbjct: 164 DFPFPAGTYSIFFRLQLGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHAT--SQC 221

Query: 162 YLSDDQAGKWLHYHVGDFLVENSYVPTKINFSMAQIDCTHTKAGLSLDSVFICP 323
           +L  D+ G+W+ YH  DF+V+NS  PTKI FSM QIDCTHTK GL +DSV I P
Sbjct: 222 FL--DEPGRWIQYHAADFVVDNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYP 273


>ref|XP_002282844.1| PREDICTED: F-box protein PP2-A12 [Vitis vinifera]
          Length = 283

 Score =  135 bits (339), Expect = 4e-30
 Identities = 69/114 (60%), Positives = 84/114 (73%), Gaps = 7/114 (6%)
 Frame = +3

Query: 3   EFEFPAGAYSLFFRLQLG---KRQG--MSNPKKVHGWDIKPVRFKL--SNGEHAAIAHEC 161
           +F FPAG YS+FFRLQLG   KR G  + NP+ VHGWDIKPVRF+L  S+G+HA    +C
Sbjct: 164 DFPFPAGTYSIFFRLQLGRASKRLGRRICNPEHVHGWDIKPVRFQLWTSDGQHAT--SQC 221

Query: 162 YLSDDQAGKWLHYHVGDFLVENSYVPTKINFSMAQIDCTHTKAGLSLDSVFICP 323
           +L  D+ G+W+ YH  DF+V+NS  PTKI FSM QIDCTHTK GL +DSV I P
Sbjct: 222 FL--DEPGRWIQYHAADFVVDNSNAPTKIKFSMTQIDCTHTKGGLCVDSVLIYP 273


>ref|XP_002322448.1| f-box family protein [Populus trichocarpa]
           gi|222869444|gb|EEF06575.1| f-box family protein
           [Populus trichocarpa]
          Length = 288

 Score =  133 bits (334), Expect = 2e-29
 Identities = 68/123 (55%), Positives = 80/123 (65%), Gaps = 6/123 (4%)
 Frame = +3

Query: 3   EFEFPAGAYSLFFRLQLGKR-----QGMSNPKKVHGWDIKPVRFKLSNGEHAAIAHECYL 167
           EFEFPAG YSLFFRLQLGK      +   N  +VHGWDIKPVRF+LS       + ECYL
Sbjct: 168 EFEFPAGTYSLFFRLQLGKTSKKLGRRTCNVDRVHGWDIKPVRFQLSTSNGQQASSECYL 227

Query: 168 SDDQAGKWLHYHVGDFLVENSYV-PTKINFSMAQIDCTHTKAGLSLDSVFICPTHHAHDV 344
              Q G W HYH GDF+V +S   P K+ FSM QIDCTHTK G+ LDSV ICP+     +
Sbjct: 228 H--QQGNWGHYHAGDFVVYSSNTAPLKLRFSMMQIDCTHTKGGVCLDSVLICPSEFREKL 285

Query: 345 RTY 353
           + +
Sbjct: 286 KQF 288


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