BLASTX nr result

ID: Panax21_contig00034241 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034241
         (456 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_197816.3| gamma-irradiation and mitomycin c induced 1 [Ar...   125   4e-27
dbj|BAB10394.1| unnamed protein product [Arabidopsis thaliana]        125   4e-27
ref|XP_002874183.1| predicted protein [Arabidopsis lyrata subsp....   119   2e-25
emb|CAN64522.1| hypothetical protein VITISV_043621 [Vitis vinifera]   116   2e-24
ref|XP_002272676.2| PREDICTED: uncharacterized protein LOC100252...   115   4e-24

>ref|NP_197816.3| gamma-irradiation and mitomycin c induced 1 [Arabidopsis thaliana]
            gi|332005896|gb|AED93279.1| gamma-irradiation and
            mitomycin c induced 1 [Arabidopsis thaliana]
          Length = 1598

 Score =  125 bits (314), Expect = 4e-27
 Identities = 74/152 (48%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
 Frame = +3

Query: 3    LNASHCEELEIKGALPFDAVVDAGHVPPDEVVAVVRPTSFNSVGTSKTLDQKYIARVDSE 182
            L+   C EL+I G LP    V AG  PP ++VAVVRP  F S+  SK LDQK I ++D E
Sbjct: 733  LDERDCRELKIDGELPIGNSVRAGKAPPKQIVAVVRPACFTSLTPSKKLDQKNIVKMDGE 792

Query: 183  -MALEIKFMAEDKNLQEYTHIHSARVSPLLRKGIHGLYIFSLRSKFPNLFEKAGQYKFSF 359
             M + +K  + DKN      I S R+ P  RKGI GLYIFSL SKFPNLF+KAG Y FSF
Sbjct: 793  EMVMVVKLKSSDKN------ISSQRLFPTSRKGISGLYIFSLGSKFPNLFKKAGTYNFSF 846

Query: 360  HLIDSSCGNYVKSVEVKALSQATRWGLVNDMQ 455
             + +S   N  K+V V+  S+A RW L ++++
Sbjct: 847  SIGNSIKCN--KTVVVRPSSKAARWELDDNLE 876


>dbj|BAB10394.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1634

 Score =  125 bits (314), Expect = 4e-27
 Identities = 74/152 (48%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
 Frame = +3

Query: 3    LNASHCEELEIKGALPFDAVVDAGHVPPDEVVAVVRPTSFNSVGTSKTLDQKYIARVDSE 182
            L+   C EL+I G LP    V AG  PP ++VAVVRP  F S+  SK LDQK I ++D E
Sbjct: 742  LDERDCRELKIDGELPIGNSVRAGKAPPKQIVAVVRPACFTSLTPSKKLDQKNIVKMDGE 801

Query: 183  -MALEIKFMAEDKNLQEYTHIHSARVSPLLRKGIHGLYIFSLRSKFPNLFEKAGQYKFSF 359
             M + +K  + DKN      I S R+ P  RKGI GLYIFSL SKFPNLF+KAG Y FSF
Sbjct: 802  EMVMVVKLKSSDKN------ISSQRLFPTSRKGISGLYIFSLGSKFPNLFKKAGTYNFSF 855

Query: 360  HLIDSSCGNYVKSVEVKALSQATRWGLVNDMQ 455
             + +S   N  K+V V+  S+A RW L ++++
Sbjct: 856  SIGNSIKCN--KTVVVRPSSKAARWELDDNLE 885


>ref|XP_002874183.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297320020|gb|EFH50442.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 1607

 Score =  119 bits (299), Expect = 2e-25
 Identities = 71/155 (45%), Positives = 95/155 (61%), Gaps = 4/155 (2%)
 Frame = +3

Query: 3    LNASHCEELEIKGALPFDAVVDAGHVPPDEVVAVVRPTSFNSVGTSKTLDQKYIARVDSE 182
            L+   C EL+I G LP    V AG   P ++VAVVRP  F S   SK LDQK+I ++D E
Sbjct: 729  LDERDCRELKIDGELPVGDSVRAGKATPKQIVAVVRPACFTSSTPSKKLDQKHIVKMDGE 788

Query: 183  -MALEIKFMAEDKNLQEYTHIHSARVSPLLRKGIHGLYIFSLRSKFPNLFEKAGQYKFSF 359
             M + +   + DKN++    + S R+ P  RKGI GLYIF L SKFPNLF+KAG YKFSF
Sbjct: 789  EMVMVVTLKSSDKNVKS---VCSQRMFPTSRKGISGLYIFPLGSKFPNLFKKAGTYKFSF 845

Query: 360  HLIDSSCGNYV---KSVEVKALSQATRWGLVNDMQ 455
                 S GN +   K+V V+  S+A +W L ++++
Sbjct: 846  -----SIGNLIKCNKTVVVRPSSKAAKWELDDNLE 875


>emb|CAN64522.1| hypothetical protein VITISV_043621 [Vitis vinifera]
          Length = 1459

 Score =  116 bits (291), Expect = 2e-24
 Identities = 66/137 (48%), Positives = 82/137 (59%), Gaps = 15/137 (10%)
 Frame = +3

Query: 3    LNASHCEELEIKGALPFDAVVDAGHVPPDEVVAVVRPTSFNSVG---------------T 137
            L+  HC ELE+ GALP DA V AG VPP E+VAVVRP SF S                  
Sbjct: 869  LSERHCLELEVDGALPVDAPVHAGQVPPKEIVAVVRPASFVSSSASKNLDQKYIIKDNFA 928

Query: 138  SKTLDQKYIARVDSEMALEIKFMAEDKNLQEYTHIHSARVSPLLRKGIHGLYIFSLRSKF 317
            SK LDQKYI + + E+++E+K M   K+ +   HI+S  V+P  R G HGLYIF L  KF
Sbjct: 929  SKNLDQKYIIKDNLELSMEVKLMDGTKDTK---HIYSKCVTPSSRNGFHGLYIFPLGCKF 985

Query: 318  PNLFEKAGQYKFSFHLI 368
            P LF+KAG Y F+  L+
Sbjct: 986  PQLFQKAGVYTFTVFLV 1002


>ref|XP_002272676.2| PREDICTED: uncharacterized protein LOC100252197 [Vitis vinifera]
          Length = 1887

 Score =  115 bits (288), Expect = 4e-24
 Identities = 66/136 (48%), Positives = 81/136 (59%), Gaps = 15/136 (11%)
 Frame = +3

Query: 3    LNASHCEELEIKGALPFDAVVDAGHVPPDEVVAVVRPTSFNSVG---------------T 137
            L+  HC ELE+ GALP DA V AG VPP E+VAVVRP SF S                  
Sbjct: 740  LSERHCLELEVDGALPVDAPVHAGQVPPKEIVAVVRPASFVSSSASKNLDQKYIIKDNFA 799

Query: 138  SKTLDQKYIARVDSEMALEIKFMAEDKNLQEYTHIHSARVSPLLRKGIHGLYIFSLRSKF 317
            SK LDQKYI + + E+++E+K M   K+ +   HI+S  V+P  R G HGLYIF L  KF
Sbjct: 800  SKNLDQKYIIKDNLELSMEVKLMDGTKDTK---HIYSKCVTPSSRNGFHGLYIFPLGCKF 856

Query: 318  PNLFEKAGQYKFSFHL 365
            P LF+KAG Y F+  L
Sbjct: 857  PQLFQKAGVYTFTVFL 872


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