BLASTX nr result

ID: Panax21_contig00034237 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034237
         (780 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312730.1| predicted protein [Populus trichocarpa] gi|2...    52   1e-08
ref|XP_003599621.1| F-box/kelch-repeat protein [Medicago truncat...    52   2e-08
emb|CBI40164.3| unnamed protein product [Vitis vinifera]               52   4e-08
ref|XP_002516806.1| conserved hypothetical protein [Ricinus comm...    49   1e-07
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g...    49   2e-07

>ref|XP_002312730.1| predicted protein [Populus trichocarpa] gi|222852550|gb|EEE90097.1|
           predicted protein [Populus trichocarpa]
          Length = 445

 Score = 51.6 bits (122), Expect(2) = 1e-08
 Identities = 47/157 (29%), Positives = 72/157 (45%), Gaps = 6/157 (3%)
 Frame = -2

Query: 455 SLKTKCWKRVK-FSYDIMSASDGPVVEGRLHWRVVYKEDYSGSEEILCFDPTTNELAVLP 279
           +LK +CW+R++ F   +     G  V+G+L W V+ +     +  I+ FD        + 
Sbjct: 264 ALKGECWRRLEDFGLGLPYDVSGKHVDGKLCWPVMPEGSIGSAWSIVAFDLAQEMFEEVV 323

Query: 278 TRKPKYGNRDLLVSGLGVLKGNLXXXXXXXXXXXXXQSHFEVTVMKEYGVVESWTTLFVI 99
             +P YG        LGVL+G L                 +V V+KE+GV +SWT LF I
Sbjct: 324 --QPDYGAVGY-ERVLGVLQGWLCVMCNYQGVRA------DVWVLKEFGVRDSWTKLFSI 374

Query: 98  SNLVTPI-----MPLSFTRDGELLMTIRYEKIVAYNP 3
             L  P+     +PL     GE+L+  +   +V YNP
Sbjct: 375 PYLDDPLWFHYSVPLCIDVGGEVLLEYK-SVLVIYNP 410



 Score = 33.9 bits (76), Expect(2) = 1e-08
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
 Frame = -3

Query: 637 GLVNGLLLIEIGNSFF-LWNPFTGYFNNVLNGWY---LGGS--IGFCYDPCTDDYKLLA 479
           G  +GL+ + I   F  LWNP T  FN + +  +   LG     GF YD   DDYK+LA
Sbjct: 183 GSCDGLVCLGIKQDFVVLWNPSTRVFNRLPDLGFAKKLGSYTVFGFGYDSQIDDYKVLA 241


>ref|XP_003599621.1| F-box/kelch-repeat protein [Medicago truncatula]
           gi|355488669|gb|AES69872.1| F-box/kelch-repeat protein
           [Medicago truncatula]
          Length = 359

 Score = 52.0 bits (123), Expect(2) = 2e-08
 Identities = 42/136 (30%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
 Frame = -2

Query: 455 SLKTKCWKRVK-FSYDIMSAS-DGPVVEGRLHWRVVYKEDYSGSEEILCFDPTTNELA-V 285
           +L T  WK ++ F + +M     G  V GR++W             I+ FD        V
Sbjct: 187 TLGTHFWKTIQEFPFGVMPVEKSGKFVSGRINWLASTDLRLQSPRFIVSFDLRKESYEKV 246

Query: 284 LPTRKPKYGNRDLLVSGLGVLKGNLXXXXXXXXXXXXXQSHFEVTVMKEYGVVESWTTLF 105
           LP         D+    L VL+  L               H ++ VMKEYG+ ESWT LF
Sbjct: 247 LPP-----DGVDVCNLSLSVLRDCLSIFA----------GHHDIWVMKEYGIQESWTKLF 291

Query: 104 VISNLVTPIMPLSFTR 57
            ISN+ +P   +SFT+
Sbjct: 292 TISNMPSPNSSVSFTK 307



 Score = 32.7 bits (73), Expect(2) = 2e-08
 Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
 Frame = -3

Query: 712 MLLSLELP---TPRRSTKITPTLY-------PRFKGLVNGLLLIEIGN-SFFLWNPFTGY 566
           ML S +L    T R +T +T   Y       P   G  NG L +   N S  LWNP    
Sbjct: 84  MLTSYQLNCLFTRRVTTNVTKLKYRFNNCNKPNIVGSCNGFLCVAFSNYSIVLWNPSINK 143

Query: 565 FNNV----LNGWYLGGSIGFCYDPCTDDYKLL 482
           F  +     +      +  F YD  TD+YK++
Sbjct: 144 FKELPLIQKSQGITNLTFSFGYDSLTDNYKVI 175


>emb|CBI40164.3| unnamed protein product [Vitis vinifera]
          Length = 423

 Score = 51.6 bits (122), Expect(2) = 4e-08
 Identities = 43/155 (27%), Positives = 70/155 (45%), Gaps = 4/155 (2%)
 Frame = -2

Query: 455 SLKTKCWKRVKFSYD--IMSASDGPVVEGRLHWRVVYKEDYSGSEE-ILCFDPTTNELAV 285
           SL+T  W++V  +    I S      + G LHW    K +   ++  IL FD   +    
Sbjct: 197 SLRTGSWRKVDANICCYIHSNVSRTFINGALHWLAGKKNEMDNTDNLILSFDMAKDVFKE 256

Query: 284 LPTRKPKYGNRDLLVSGLGVLKGNLXXXXXXXXXXXXXQSHFEVTVMKEYGVVESWTTLF 105
           +    P +G  +L+   L   KG+L               + +V VM+EYGV +SWT  F
Sbjct: 257 IML--PDFGYDELIRKCLADYKGSLSVLFYDAYHSN---ENCDVWVMEEYGVAKSWTKHF 311

Query: 104 VISNLVTPIMPLSFTRDGE-LLMTIRYEKIVAYNP 3
            I + +  I+P  F  +GE +L   +    +++NP
Sbjct: 312 TIRHEIEIIIPFEFFDNGEAILQKKKSGGFISWNP 346



 Score = 32.0 bits (71), Expect(2) = 4e-08
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 16/89 (17%)
 Frame = -3

Query: 700 LELPTPRRSTKITPTLYPRFKGLVNGLLLIEIGN--------SFFLWNPFTGYF------ 563
           LE+P P +      T Y +  G  NGL+ +   N        + FLWNP    F      
Sbjct: 99  LEVPVPSK------TDYYQIVGSSNGLICLTESNFKGSYLSLNLFLWNPAIREFQTLPKY 152

Query: 562 --NNVLNGWYLGGSIGFCYDPCTDDYKLL 482
             NN  +   + G +GF + P  +DYK++
Sbjct: 153 HINNFTSPLMVVG-LGFAFHPVINDYKVV 180


>ref|XP_002516806.1| conserved hypothetical protein [Ricinus communis]
           gi|223543894|gb|EEF45420.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 403

 Score = 48.9 bits (115), Expect(2) = 1e-07
 Identities = 39/152 (25%), Positives = 67/152 (44%), Gaps = 2/152 (1%)
 Frame = -2

Query: 455 SLKTKCWKRV-KFSYDIMSASDGPVVEGRLHWRVVYKEDYSGSEEIL-CFDPTTNELAVL 282
           SL+T  W+++  F +D      G  + G +HW  + +E+      ++  FD        +
Sbjct: 223 SLRTDSWRKIDNFCHDFCFHHSGVFLRGAIHWMAINREEVDDEYYVISAFDMEKELFWDM 282

Query: 281 PTRKPKYGNRDLLVSGLGVLKGNLXXXXXXXXXXXXXQSHFEVTVMKEYGVVESWTTLFV 102
           P    +  + + +   LG L  +L               H +  VM EYGV ESWT L +
Sbjct: 283 PAPDMEDDDSEFM---LGTLNEDLCVLKSFNEM------HNDFWVMHEYGVGESWTRLTI 333

Query: 101 ISNLVTPIMPLSFTRDGELLMTIRYEKIVAYN 6
             + +  + PL   ++GE L+ I   ++V YN
Sbjct: 334 SLSYIC-MKPLCLAKNGEALLDID-GRLVQYN 363



 Score = 33.5 bits (75), Expect(2) = 1e-07
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 637 GLVNGLLLIEIG-NSFFLWNPFTGYFNNVLNGWYLGGSIGFCYDPCTDDYKLL 482
           G  NGLL I    +S FL+NP T     +L       + GF YD   DDYK++
Sbjct: 159 GSCNGLLCIAPDEDSLFLFNPSTRESKKILEESNYVTAFGFGYDSTRDDYKVV 211


>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
           gi|222843314|gb|EEE80861.1| f-box family protein
           [Populus trichocarpa]
          Length = 408

 Score = 48.5 bits (114), Expect(2) = 2e-07
 Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 22/177 (12%)
 Frame = -2

Query: 467 VYSMSLKTKCWKRV-KFSYDIMSASDGPVVEGRLHWRVVYKEDYSGSEEILCFDPTTNEL 291
           V  ++L    W+ + K SY ++  +   +V GRLHW V        +  ++ FD T  + 
Sbjct: 207 VQILTLGCPGWRSLGKVSYRLVRRASETLVNGRLHW-VSRPCRNKPARRLVSFDLTDEQF 265

Query: 290 AVLPTRKPKYGNRDLLVSGLGVLKGNLXXXXXXXXXXXXXQSHFEVTVMKEYGVVESWTT 111
             +P  KP  G  +     L VL+G L                 E+ VMKEY V ESW  
Sbjct: 266 REVP--KPDCGGLNRCDYHLAVLRGCLSVAVYCNY------GRLEIWVMKEYNVKESWVK 317

Query: 110 LFVI---------SNLVTP------------IMPLSFTRDGELLMTIRYEKIVAYNP 3
            + I          NLV P            +  L   ++GE+L+  +   +V+Y+P
Sbjct: 318 EYNIGAYMPKGLKQNLVRPLKIWKNASNGRAVRALCVLKNGEILLEYKNRALVSYDP 374



 Score = 32.7 bits (73), Expect(2) = 2e-07
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 8/67 (11%)
 Frame = -3

Query: 658 TLYPRFK--GLVNGLLLIE---IGNSFFLWNPFTGYFNNVLNGWYLGGS---IGFCYDPC 503
           ++ P F+  G  NGLL +      +S +++NPFTG +  +             GF ++P 
Sbjct: 116 SMMPEFEVVGSCNGLLCLSDSLFNDSLYIYNPFTGRYKELPKSLQYPDQEVVFGFGFNPK 175

Query: 502 TDDYKLL 482
           T++YK++
Sbjct: 176 TNEYKVI 182


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