BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00034197
         (450 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36977.3| unnamed protein product [Vitis vinifera]              145   3e-33
ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t...   129   2e-28
ref|XP_002880355.1| pentatricopeptide repeat-containing protein ...    92   6e-17
ref|NP_179705.1| pentatricopeptide repeat-containing protein [Ar...    91   7e-17
ref|XP_002878586.1| pentatricopeptide repeat-containing protein ...    90   2e-16

>emb|CBI36977.3| unnamed protein product [Vitis vinifera]
          Length = 372

 Score =  145 bits (366), Expect = 3e-33
 Identities = 74/149 (49%), Positives = 97/149 (65%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           R+ V WN+IIS YI++++   AQ LFD+MP RD+VSWNT L    K  NPE VY+ FL+M
Sbjct: 50  RNTVIWNTIISAYIQNDEPHNAQNLFDEMPDRDIVSWNTALSGLKKIKNPEGVYLCFLKM 109

Query: 181 LRAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDC 360
            R G KP+EF  S + SA + T F+V              N+ V+VG ALMRGYA + D 
Sbjct: 110 RRVGLKPNEFTLSIMISAILDTVFNVLTPQIHAVVVSLGFNSSVFVGSALMRGYAHVGDR 169

Query: 361 EGLRLVFDDILVKDVTTWNALILGYMELG 447
             L  VFD+I +K+V +WNAL+LGYM+LG
Sbjct: 170 VALGRVFDEISIKNVASWNALVLGYMDLG 198



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 41/140 (29%), Positives = 66/140 (47%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           R+VVSW ++++GYI + + S A+ +FD+M  R+VVSW  M+    + G        FL M
Sbjct: 213 RNVVSWTTLVNGYIGNKKTSAARSVFDRMTERNVVSWTVMISGYVQNGKFVDALRLFLLM 272

Query: 181 LRAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDC 360
           LR+G + + F  S+V  A       +                DV +  +L+  YA   D 
Sbjct: 273 LRSGTQGNHFTLSSVLEACAGCSSLLLGKQVHLNVLKSGIPDDVILSTSLVDMYAKCGDI 332

Query: 361 EGLRLVFDDILVKDVTTWNA 420
           E    +F  +  K++  W A
Sbjct: 333 EAAFCIFQSMPKKNL-VWAA 351


>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 607

 Score =  129 bits (324), Expect = 2e-28
 Identities = 63/148 (42%), Positives = 93/148 (62%)
 Frame = +1

Query: 4   DVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEML 183
           ++VSWN +++ Y++HNQ+    +LFD+MP++D VSWN ML    +  N E +Y  FL+M 
Sbjct: 39  NIVSWNMVMTAYLQHNQIGPVHDLFDKMPLKDAVSWNIMLSGFQRTRNSEGLYRCFLQMG 98

Query: 184 RAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDCE 363
           RAG  P+++  ST+  A IST+  V                +V+VG +L+R YA L++ E
Sbjct: 99  RAGVVPNDYTISTLLRAVISTELDVLVRQVHALAFHLGHYLNVFVGSSLIRAYAGLKEEE 158

Query: 364 GLRLVFDDILVKDVTTWNALILGYMELG 447
            L   F+DI +KDVT+WNAL+  YMELG
Sbjct: 159 ALGRAFNDISMKDVTSWNALVSSYMELG 186



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 43/150 (28%), Positives = 74/150 (49%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           R+++SW ++++GY+K+ Q++ A+ +FD M  R+VVSW  M+    +          F+ M
Sbjct: 201 RNIISWTTLVNGYVKNKQVNKARSVFDDMSERNVVSWTAMISGYVQNKRFVDALKLFVLM 260

Query: 181 LRAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDC 360
            +   +P+ F FS+V  A   +   +                DV    +L+  YA   D 
Sbjct: 261 FKTETRPNHFTFSSVLDACAGSSSLIMGLQLHPCIIKSGIANDVIWLTSLVDMYAKCGDM 320

Query: 361 EGLRLVFDDILVKDVTTWNALILGYMELGL 450
           +    VF+ I  K++ +WNA+I GY   GL
Sbjct: 321 DAAFGVFESIRDKNLVSWNAIIGGYASHGL 350


>ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297326194|gb|EFH56614.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 599

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 48/149 (32%), Positives = 81/149 (54%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           R++ SWN+++SG++K   +  A+ +FD MP RDVVSWNTM+    + GN  +    F E+
Sbjct: 111 RNLYSWNNMVSGFVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKEL 170

Query: 181 LRAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDC 360
            R+G K +EF F+ + +A + ++                  ++V +  +++  YA     
Sbjct: 171 RRSGIKFNEFSFAGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQM 230

Query: 361 EGLRLVFDDILVKDVTTWNALILGYMELG 447
           E  +  FD++ VKD+  W  LI GY +LG
Sbjct: 231 ESAKRCFDEMTVKDIHIWTTLISGYAKLG 259



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 1/151 (0%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           +D+  W ++ISGY K   M  A +LF +MP ++ VSW  ++    + G+ +     F +M
Sbjct: 243 KDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKM 302

Query: 181 LRAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDC 360
           +    KP +F FS+   A  S                     +  V  +L+  Y+     
Sbjct: 303 IAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSL 362

Query: 361 EGLRLVFDDILVK-DVTTWNALILGYMELGL 450
           E    VF     K D   WN +I    + GL
Sbjct: 363 EASERVFRICYDKQDCVLWNTMISALAQHGL 393


>ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g21090 gi|4803934|gb|AAD29807.1| unknown protein
           [Arabidopsis thaliana] gi|330252028|gb|AEC07122.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 597

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 48/149 (32%), Positives = 80/149 (53%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           R++ SWN+++SGY+K   +  A+ +FD MP RDVVSWNTM+    + GN  +    + E 
Sbjct: 111 RNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEF 170

Query: 181 LRAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDC 360
            R+G K +EF F+ + +A + ++                  ++V +  +++  YA     
Sbjct: 171 RRSGIKFNEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQM 230

Query: 361 EGLRLVFDDILVKDVTTWNALILGYMELG 447
           E  +  FD++ VKD+  W  LI GY +LG
Sbjct: 231 ESAKRCFDEMTVKDIHIWTTLISGYAKLG 259



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 41/153 (26%), Positives = 65/153 (42%), Gaps = 3/153 (1%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           +D+  W ++ISGY K   M  A++LF +MP ++ VSW  ++    + G+  +    F +M
Sbjct: 243 KDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKM 302

Query: 181 LRAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDC 360
           +  G KP +F FS+   A  S                     +  V  +L+  Y+     
Sbjct: 303 IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSL 362

Query: 361 EGLRLVF---DDILVKDVTTWNALILGYMELGL 450
           E    VF   DD    D   WN +I    + GL
Sbjct: 363 EASERVFRICDD--KHDCVFWNTMISALAQHGL 393


>ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324425|gb|EFH54845.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 786

 Score = 90.1 bits (222), Expect = 2e-16
 Identities = 48/149 (32%), Positives = 77/149 (51%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           R   SWN+++S Y K   M  + E FD++P RD VSW TM+      G   K      EM
Sbjct: 78  RTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEM 137

Query: 181 LRAGHKPSEFPFSTVTSAFISTKFSVXXXXXXXXXXXXXXNADVYVGPALMRGYADLRDC 360
           +R G +PS+F  + V ++  +T+                   +V V  +L+  YA   D 
Sbjct: 138 MREGIEPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDP 197

Query: 361 EGLRLVFDDILVKDVTTWNALILGYMELG 447
              ++VFD ++VKD+++WNA+I  +M++G
Sbjct: 198 MMAKVVFDRMVVKDISSWNAMIALHMQVG 226



 Score = 66.6 bits (161), Expect = 2e-09
 Identities = 48/184 (26%), Positives = 78/184 (42%), Gaps = 34/184 (18%)
 Frame = +1

Query: 1   RDVVSWNSIISGYIKHNQMSLAQELFDQMPVRDVVSWNTMLWSSHKAGNPEKVYISFLEM 180
           +D+ SWN++I+ +++  QM LA   F+QM  RD+V+WN+M+   ++ G   +    F +M
Sbjct: 210 KDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKM 269

Query: 181 LRAGH-KPSEFPFSTVTSA----------------FISTKFSVXXXXXXXXXXXXXXNAD 309
           LR     P  F  ++V SA                 ++T F +                 
Sbjct: 270 LRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGG 329

Query: 310 VYVG-----------------PALMRGYADLRDCEGLRLVFDDILVKDVTTWNALILGYM 438
           V                     AL+ GY  L D    + +FD +  +DV  W A+I+GY 
Sbjct: 330 VETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYE 389

Query: 439 ELGL 450
           + GL
Sbjct: 390 QHGL 393