BLASTX nr result

ID: Panax21_contig00033946 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033946
         (493 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265430.1| PREDICTED: uncharacterized protein LOC100256...   194   6e-48
ref|XP_002324772.1| predicted protein [Populus trichocarpa] gi|2...   189   2e-46
ref|NP_565080.1| Mitochondrial transcription termination factor ...   186   1e-45
ref|XP_002888966.1| hypothetical protein ARALYDRAFT_476555 [Arab...   181   4e-44
gb|AAG52507.1|AC016662_1 unknown protein, 5' partial; 35-1255 [A...   165   3e-39

>ref|XP_002265430.1| PREDICTED: uncharacterized protein LOC100256963 [Vitis vinifera]
           gi|297734077|emb|CBI15324.3| unnamed protein product
           [Vitis vinifera]
          Length = 451

 Score =  194 bits (493), Expect = 6e-48
 Identities = 97/161 (60%), Positives = 124/161 (77%)
 Frame = +1

Query: 10  CVQRVKGLGFSDITVCRVLEVSPEAILFTSGEIIRDKINFLEGIGIQRNGIDWIFGKFPG 189
           CV+ +KGLGFSD TV R+LE  P  I+    EI R KI FL GIGI  +GID IF   PG
Sbjct: 157 CVKVLKGLGFSDGTVDRILEEFPRVIMSNESEIQR-KIQFLLGIGIPESGIDGIFHSLPG 215

Query: 190 VLAFGLENRLKPLLDEFMDLSCSLVEVKKEIVRDPKVLGLEVGELSQCLRMLRSLKCRIS 369
           +L  G+E+RL+PLLDEF  L  S   V++EI R+P++LG+E+GE+S+CL ++ +LKCR+ 
Sbjct: 216 ILGLGIEDRLEPLLDEFGKLGFSEDVVRREISREPRMLGMELGEMSRCLELVGTLKCRVP 275

Query: 370 VKEKIFCDGAFRAGYEVKLRVDCLCKYGLIRRDAFTVLWKE 492
           +KEKIF +GA RAG+EVKLRVDCLC+YGLIRR+AF VLWKE
Sbjct: 276 IKEKIFREGALRAGFEVKLRVDCLCRYGLIRREAFEVLWKE 316


>ref|XP_002324772.1| predicted protein [Populus trichocarpa] gi|222866206|gb|EEF03337.1|
           predicted protein [Populus trichocarpa]
          Length = 412

 Score =  189 bits (481), Expect = 2e-46
 Identities = 97/157 (61%), Positives = 119/157 (75%)
 Frame = +1

Query: 22  VKGLGFSDITVCRVLEVSPEAILFTSGEIIRDKINFLEGIGIQRNGIDWIFGKFPGVLAF 201
           +KGLGFS+ T  RVLE  P  I     EI R +I FL  IGI R+G+D +F  FP VL F
Sbjct: 121 LKGLGFSESTTRRVLEGFPGVIALKECEIHR-RIQFLMAIGIPRDGVDRVFNSFPEVLGF 179

Query: 202 GLENRLKPLLDEFMDLSCSLVEVKKEIVRDPKVLGLEVGELSQCLRMLRSLKCRISVKEK 381
           G+ENRL PLL+EF DL  S   V+KEI+R+P++LG+EVGELS+CL ++RSLKCR  +K K
Sbjct: 180 GIENRLMPLLNEFKDLGFSEELVRKEIIREPRILGMEVGELSRCLDLIRSLKCREPIKLK 239

Query: 382 IFCDGAFRAGYEVKLRVDCLCKYGLIRRDAFTVLWKE 492
           IF  GAFRAG+EVKLRVDCLCK+ LIRR+AF +LWKE
Sbjct: 240 IFSKGAFRAGFEVKLRVDCLCKHRLIRREAFKILWKE 276


>ref|NP_565080.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana]
           gi|12323819|gb|AAG51878.1|AC079678_8 unknown protein;
           33994-35331 [Arabidopsis thaliana]
           gi|332197431|gb|AEE35552.1| Mitochondrial transcription
           termination factor family protein [Arabidopsis thaliana]
          Length = 445

 Score =  186 bits (473), Expect = 1e-45
 Identities = 96/161 (59%), Positives = 116/161 (72%)
 Frame = +1

Query: 10  CVQRVKGLGFSDITVCRVLEVSPEAILFTSGEIIRDKINFLEGIGIQRNGIDWIFGKFPG 189
           CV+ +K LGF D TV R+L   P  +L    EI R KI FL GIGI R+ I+  F  FP 
Sbjct: 150 CVRVLKSLGFCDSTVSRILSSFPGVLLVNEIEI-RRKIEFLVGIGIARDNIERFFHVFPE 208

Query: 190 VLAFGLENRLKPLLDEFMDLSCSLVEVKKEIVRDPKVLGLEVGELSQCLRMLRSLKCRIS 369
           VL  G E RLKPLLDEFM +  S  +VKKEI R+P+VLGLE+GEL +CL ++ +LKCR  
Sbjct: 209 VLGIGTETRLKPLLDEFMKMGFSKDDVKKEIAREPRVLGLELGELPRCLELINTLKCREV 268

Query: 370 VKEKIFCDGAFRAGYEVKLRVDCLCKYGLIRRDAFTVLWKE 492
           ++  I  +GAFRAG+EVKLRVDCLCKYGLIRRDAF V+WKE
Sbjct: 269 IRVSIISEGAFRAGFEVKLRVDCLCKYGLIRRDAFKVVWKE 309


>ref|XP_002888966.1| hypothetical protein ARALYDRAFT_476555 [Arabidopsis lyrata subsp.
           lyrata] gi|297334807|gb|EFH65225.1| hypothetical protein
           ARALYDRAFT_476555 [Arabidopsis lyrata subsp. lyrata]
          Length = 449

 Score =  181 bits (460), Expect = 4e-44
 Identities = 92/161 (57%), Positives = 116/161 (72%)
 Frame = +1

Query: 10  CVQRVKGLGFSDITVCRVLEVSPEAILFTSGEIIRDKINFLEGIGIQRNGIDWIFGKFPG 189
           C++ +KGLGF D TV R+L   P  +L    EI R KI FL GI I R+ I+  F  FP 
Sbjct: 154 CIRVLKGLGFCDSTVSRILSSFPGVLLVNEIEIHR-KIEFLVGIDIPRDNIERFFHVFPE 212

Query: 190 VLAFGLENRLKPLLDEFMDLSCSLVEVKKEIVRDPKVLGLEVGELSQCLRMLRSLKCRIS 369
           VL  G E RLKPLLDEF+ +  S  ++K+EI R+P+VLGLE+GEL +CL ++ +LKCR  
Sbjct: 213 VLGIGTETRLKPLLDEFIKMGFSKDDIKEEIAREPRVLGLELGELPRCLELINTLKCREV 272

Query: 370 VKEKIFCDGAFRAGYEVKLRVDCLCKYGLIRRDAFTVLWKE 492
           ++  I  +GAFRAG+EVKLRVDCLCKYGLIRRDAF V+WKE
Sbjct: 273 IRLSIISEGAFRAGFEVKLRVDCLCKYGLIRRDAFKVVWKE 313


>gb|AAG52507.1|AC016662_1 unknown protein, 5' partial; 35-1255 [Arabidopsis thaliana]
          Length = 404

 Score =  165 bits (418), Expect = 3e-39
 Identities = 90/161 (55%), Positives = 109/161 (67%)
 Frame = +1

Query: 10  CVQRVKGLGFSDITVCRVLEVSPEAILFTSGEIIRDKINFLEGIGIQRNGIDWIFGKFPG 189
           CV+ +K LGF D TV R+L   P  +L    EI R KI FL GIGI R+ I+  F  FP 
Sbjct: 111 CVRVLKSLGFCDSTVSRILSSFPGVLLVNEIEI-RRKIEFLVGIGIARDNIERFFHVFPE 169

Query: 190 VLAFGLENRLKPLLDEFMDLSCSLVEVKKEIVRDPKVLGLEVGELSQCLRMLRSLKCRIS 369
           VL  G E RLKPLLDEFM +  S  +VKKEI R+ + L     EL +CL ++ +LKCR  
Sbjct: 170 VLGIGTETRLKPLLDEFMKMGFSKDDVKKEIAREREFLVWS--ELPRCLELINTLKCREV 227

Query: 370 VKEKIFCDGAFRAGYEVKLRVDCLCKYGLIRRDAFTVLWKE 492
           ++  I  +GAFRAG+EVKLRVDCLCKYGLIRRDAF V+WKE
Sbjct: 228 IRVSIISEGAFRAGFEVKLRVDCLCKYGLIRRDAFKVVWKE 268


Top