BLASTX nr result

ID: Panax21_contig00033775 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033775
         (471 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]    54   5e-12
emb|CAN64225.1| hypothetical protein VITISV_016222 [Vitis vinifera]    56   2e-11
gb|AFK44938.1| unknown [Lotus japonicus]                               54   3e-11
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi...    55   1e-10
dbj|BAD99221.1| polypepetide with reverse transcriptase and RNas...    52   1e-10

>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
          Length = 1316

 Score = 53.9 bits (128), Expect(2) = 5e-12
 Identities = 24/46 (52%), Positives = 31/46 (67%)
 Frame = -3

Query: 436  AVYEITWMLALLQDFGLKSLTPVTFYCDNKSALHITSNIVFHVRTK 299
            A  E+TW+ +LL   G+    P+  YCDNK+ALHI +N VFH RTK
Sbjct: 1213 AASELTWLKSLLASLGVLHDKPMKLYCDNKAALHIAANPVFHERTK 1258



 Score = 41.6 bits (96), Expect(2) = 5e-12
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
 Frame = -2

Query: 305  H*ATDCHLVGKKLIQERVSTAHLPSHLQPADVFTRALSA-----LITELGVHNL 159
            H   DCH V +K+    + T +LPS LQ AD+FT+AL       L ++LG+ +L
Sbjct: 1259 HIEIDCHFVREKVQSGEIVTTYLPSKLQXADMFTKALGRQQFLFLSSKLGIRDL 1312


>emb|CAN64225.1| hypothetical protein VITISV_016222 [Vitis vinifera]
          Length = 987

 Score = 56.2 bits (134), Expect(2) = 2e-11
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = -3

Query: 427  EITWMLALLQDFGLKSLTPVTFYCDNKSALHITSNIVFHVRTK 299
            E+TW++ALL+D G+        YCDN++ALHI +N VFH RTK
Sbjct: 887  ELTWLIALLKDLGVPHTQXALLYCDNQAALHIVANXVFHERTK 929



 Score = 37.4 bits (85), Expect(2) = 2e-11
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
 Frame = -2

Query: 305  H*ATDCHLVGKKLIQERVSTAHLPSHLQPADVFTRAL-----SALITELGVHNLF 156
            H   DCH+V +K+    + T H+ S  Q AD+ T+ L     ++LI ++G++N++
Sbjct: 930  HIEIDCHIVREKIQTGMLKTLHVASQHQLADILTKPLFPDQFNSLIDKMGMYNIY 984


>gb|AFK44938.1| unknown [Lotus japonicus]
          Length = 107

 Score = 53.5 bits (127), Expect(2) = 3e-11
 Identities = 21/43 (48%), Positives = 33/43 (76%)
 Frame = -3

Query: 427 EITWMLALLQDFGLKSLTPVTFYCDNKSALHITSNIVFHVRTK 299
           E+ W+  +L D G++ ++P+  +CDN++ALHI+SN VFH RTK
Sbjct: 7   ELMWVGQILSDMGIERISPMKLWCDNQAALHISSNPVFHERTK 49



 Score = 39.3 bits (90), Expect(2) = 3e-11
 Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 5/55 (9%)
 Frame = -2

Query: 305 H*ATDCHLVGKKLIQERVSTAHLPSHLQPADVFTRALSA-----LITELGVHNLF 156
           H   DCH + +KL Q  +ST+++ +  Q ADVFT+AL+      +  +LG+ N++
Sbjct: 50  HIEVDCHFIREKLQQNLISTSYVRTGDQHADVFTKALNGVRNDFICNKLGMINIY 104


>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1501

 Score = 55.5 bits (132), Expect(2) = 1e-10
 Identities = 23/46 (50%), Positives = 33/46 (71%)
 Frame = -3

Query: 436  AVYEITWMLALLQDFGLKSLTPVTFYCDNKSALHITSNIVFHVRTK 299
            A+ EI W+  LL++ G++  TP   YCD+K+A+HI +N VFH RTK
Sbjct: 1398 ALKEIKWLRKLLKELGIEQSTPARLYCDSKAAIHIAANPVFHERTK 1443



 Score = 35.4 bits (80), Expect(2) = 1e-10
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
 Frame = -2

Query: 305  H*ATDCHLVGKKLIQERVSTAHLPSHLQPADVFTRALSA-----LITELGVHNL 159
            H  +DCH V   +    ++T H+ +  Q ADVFT+AL       L+++LGV NL
Sbjct: 1444 HIESDCHSVRDAVRDGIITTQHVRTTEQLADVFTKALGRNQFLYLMSKLGVQNL 1497


>dbj|BAD99221.1| polypepetide with reverse transcriptase and RNaseH domains [Petunia
           x hybrida]
          Length = 389

 Score = 52.0 bits (123), Expect(2) = 1e-10
 Identities = 23/45 (51%), Positives = 30/45 (66%)
 Frame = -3

Query: 433 VYEITWMLALLQDFGLKSLTPVTFYCDNKSALHITSNIVFHVRTK 299
           V EI W++ LL D  +    PV+ +CDN+SA+HI  N VFH RTK
Sbjct: 284 VAEIAWIVRLLHDLSVDFSLPVSVHCDNQSAIHIAKNPVFHERTK 328



 Score = 38.9 bits (89), Expect(2) = 1e-10
 Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 5/62 (8%)
 Frame = -2

Query: 305 H*ATDCHLVGKKLIQERVSTAHLPSHLQPADVFTRALS-----ALITELGVHNLFQTPNL 141
           H   DCH V +KL+   +S + +PS  Q AD+FT++L+     +L+ +LGV     T  L
Sbjct: 329 HIELDCHFVREKLLDGLISLSFVPSSSQIADIFTKSLTGPLHRSLMGKLGVRKSGST--L 386

Query: 140 RG 135
           RG
Sbjct: 387 RG 388


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