BLASTX nr result

ID: Panax21_contig00033678 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033678
         (368 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containin...    68   7e-10
ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containin...    65   6e-09
ref|XP_002511264.1| nucleic acid binding protein, putative [Rici...    62   4e-08
ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containin...    60   1e-07
ref|XP_003549835.1| PREDICTED: zinc finger CCCH domain-containin...    59   3e-07

>ref|XP_003522417.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
           [Glycine max]
          Length = 570

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 31/52 (59%), Positives = 40/52 (76%)
 Frame = -1

Query: 158 EAPVYPMSERSLPTPPAFSMNFPASDAKFYSQHQQQMLLEEYPERPGQPECS 3
           +APVY +SERSL  P  + MN PA ++  Y  HQ+QML+EE+PERPG+PECS
Sbjct: 419 QAPVY-LSERSLHPPSTYVMNNPAMESNVYMHHQKQMLVEEFPERPGEPECS 469


>ref|XP_002277300.1| PREDICTED: zinc finger CCCH domain-containing protein 43 isoform 1
           [Vitis vinifera] gi|297733636|emb|CBI14883.3| unnamed
           protein product [Vitis vinifera]
          Length = 484

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
 Frame = -1

Query: 158 EAPVYPMS--ERSLPTPPAFSMNFPASDAKFYSQHQQQM--LLEEYPERPGQPECS 3
           +AP+YP    ERS+  PPAF +N  A+DA  Y  HQQQ   L+E++PERPGQPECS
Sbjct: 317 QAPLYPPPPPERSMHPPPAFVINNTATDANVYGHHQQQQQSLIEDFPERPGQPECS 372


>ref|XP_002511264.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223550379|gb|EEF51866.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 495

 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 27/48 (56%), Positives = 38/48 (79%)
 Frame = -1

Query: 146 YPMSERSLPTPPAFSMNFPASDAKFYSQHQQQMLLEEYPERPGQPECS 3
           +P+ ERS+  PPA+ ++ PA+D   Y+ HQQQ+ +EE+PERPGQPECS
Sbjct: 340 FPLYERSMHQPPAYVISNPATDTNVYA-HQQQIQVEEFPERPGQPECS 386


>ref|XP_003525622.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
           [Glycine max]
          Length = 490

 Score = 60.5 bits (145), Expect = 1e-07
 Identities = 28/52 (53%), Positives = 36/52 (69%)
 Frame = -1

Query: 158 EAPVYPMSERSLPTPPAFSMNFPASDAKFYSQHQQQMLLEEYPERPGQPECS 3
           +A VY + ERS+  P  F MN PA D   Y  HQ+QM ++E+PERPG+PECS
Sbjct: 333 QASVY-LPERSIHPPSTFVMNNPAIDTNVYMHHQKQMPVDEFPERPGEPECS 383


>ref|XP_003549835.1| PREDICTED: zinc finger CCCH domain-containing protein 43-like
           [Glycine max]
          Length = 501

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 27/52 (51%), Positives = 36/52 (69%)
 Frame = -1

Query: 158 EAPVYPMSERSLPTPPAFSMNFPASDAKFYSQHQQQMLLEEYPERPGQPECS 3
           +A VY + ER++  P  F MN PA D   Y  HQ+QM ++E+PERPG+PECS
Sbjct: 343 QASVY-LPERNMHPPSTFVMNNPAIDTNVYMHHQKQMPVDEFPERPGEPECS 393


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