BLASTX nr result

ID: Panax21_contig00033609 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033609
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002323415.1| predicted protein [Populus trichocarpa] gi|2...    94   9e-18
ref|XP_002309418.1| predicted protein [Populus trichocarpa] gi|2...    91   1e-16
emb|CAN76322.1| hypothetical protein VITISV_010458 [Vitis vinifera]    85   7e-15
ref|XP_002274347.1| PREDICTED: uncharacterized protein LOC100253...    84   9e-15
emb|CAN79276.1| hypothetical protein VITISV_027900 [Vitis vinifera]    75   6e-12

>ref|XP_002323415.1| predicted protein [Populus trichocarpa] gi|222868045|gb|EEF05176.1|
           predicted protein [Populus trichocarpa]
          Length = 226

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 65/147 (44%), Positives = 82/147 (55%), Gaps = 25/147 (17%)
 Frame = -2

Query: 393 RFLNVFSPPKSSDIIT-------GAGDELNEDDVFWTGDFAEPN-QRSTSSSPTAAKLN- 241
           RFL + S   SS  +        G GDELNEDD+ WT D+ + +   S+SSSPT    N 
Sbjct: 8   RFLGIPSSTSSSSSLADGNGDSNGNGDELNEDDILWTNDYTDQSLSNSSSSSPTTTSANN 67

Query: 240 ---RNRHFFLKPENSGILAALSEDNRKYNQPLLYRKPSI--------ASSSRIIP----D 106
              ++ H    P+NSGILAAL E N   +  +LYRKPS+        +SSSR IP     
Sbjct: 68  LQSKSNHLTAFPKNSGILAALPETN---HNTVLYRKPSLPSSSSSSSSSSSRAIPLIPRS 124

Query: 105 PQEREF-SQSVPARKFQQSAPMNVRLM 28
           P   E+ SQSVP RK  QSAPMNV ++
Sbjct: 125 PHVAEYASQSVPIRKLNQSAPMNVPVL 151


>ref|XP_002309418.1| predicted protein [Populus trichocarpa] gi|222855394|gb|EEE92941.1|
           predicted protein [Populus trichocarpa]
          Length = 222

 Score = 90.5 bits (223), Expect = 1e-16
 Identities = 67/143 (46%), Positives = 82/143 (57%), Gaps = 21/143 (14%)
 Frame = -2

Query: 393 RFLNVFSPPKSSDIITGAGD------ELNEDDVFWTGDFAEPNQ-RSTSSSPTAAKLNRN 235
           RFL + S   SS +  G GD      ELNEDD+F T D     Q  S+SSSPT A  N +
Sbjct: 8   RFLGIPSSSTSSYVTDGNGDSNGNADELNEDDIFLTNDSTNQTQSNSSSSSPTTASNNSH 67

Query: 234 RHFFLK----PENSGILAALSEDNRKYNQPLLYRKPSI-----ASSSRIIP----DPQER 94
            + F +    P+NSGILAAL E N   +  +LYRKPS+     +SSSR IP     P   
Sbjct: 68  HNKFNRHTAFPQNSGILAALPEYN---HNTVLYRKPSLPPSPSSSSSRAIPLIPRSPHVA 124

Query: 93  EF-SQSVPARKFQQSAPMNVRLM 28
           E+ SQSVP RK  QSAPMNV ++
Sbjct: 125 EYASQSVPIRKMNQSAPMNVPVL 147


>emb|CAN76322.1| hypothetical protein VITISV_010458 [Vitis vinifera]
          Length = 211

 Score = 84.7 bits (208), Expect = 7e-15
 Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 9/141 (6%)
 Frame = -2

Query: 408 TPSSDRFLNVFSPPKSSDIITG-----AGDELNEDDVFWTGDFAEPNQRSTSSSPTAAKL 244
           TPSSDRFL+VFS P     + G     AGDEL+ED++FW G F +P   + + +P + + 
Sbjct: 14  TPSSDRFLDVFSHPLPRSSLPGPTNPEAGDELHEDEIFWIGGFDDPPNTAPARNPLSRRC 73

Query: 243 NRNRHFFLKPENSGILAALSEDNRK---YNQPLLYRKPSIASSSRIIPDPQEREFSQSVP 73
                       SGILAAL E  R    Y +P+  +K   ASSSR+IP   +    + VP
Sbjct: 74  GAQ-------GTSGILAALPESERSPGAYGRPMFNQK---ASSSRMIPAIPKPTVERHVP 123

Query: 72  -ARKFQQSAPMNVRLMPRKVK 13
            + K+ QSAP+NV ++ + V+
Sbjct: 124 VSAKYHQSAPVNVPVLSKSVR 144


>ref|XP_002274347.1| PREDICTED: uncharacterized protein LOC100253575 [Vitis vinifera]
          Length = 211

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 55/141 (39%), Positives = 79/141 (56%), Gaps = 9/141 (6%)
 Frame = -2

Query: 408 TPSSDRFLNVFSPPKSSDIITG-----AGDELNEDDVFWTGDFAEPNQRSTSSSPTAAKL 244
           TPSSDRFL+VFS P     + G     AGDEL+ED++FW G F +P   + + +P + + 
Sbjct: 14  TPSSDRFLDVFSHPLPRSSLPGPTNPEAGDELHEDEIFWIGGFDDPPNTAPARNPLSRRC 73

Query: 243 NRNRHFFLKPENSGILAALSEDNRK---YNQPLLYRKPSIASSSRIIPDPQEREFSQSVP 73
                       SGILAAL E  R    Y +P+  +K   ASSSR+IP   +    + VP
Sbjct: 74  GAQ-------GTSGILAALPESERSLGAYGRPMFNQK---ASSSRMIPAIPKPTVERHVP 123

Query: 72  -ARKFQQSAPMNVRLMPRKVK 13
            + K+ QSAP+NV ++ + V+
Sbjct: 124 VSAKYHQSAPVNVPVLSKAVR 144


>emb|CAN79276.1| hypothetical protein VITISV_027900 [Vitis vinifera]
          Length = 218

 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 49/128 (38%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
 Frame = -2

Query: 375 SPPKSSDIITGAGDELNEDDVFWTGDFAEPNQRSTSSSPTAAKLNRNRHFFLKPENSGIL 196
           S P + D     GD  +EDDVFWT D  EPN     ++P  A   ++   F  PE+ GIL
Sbjct: 27  SGPSTGDSSFSGGD-FSEDDVFWTSDLVEPNH--LRNNPFGA--GKSNDHFRTPESHGIL 81

Query: 195 AALSEDNRKYN---QPLLYRKPSIASSSRIIPD-------PQEREFSQSVPARKFQQSAP 46
           A L + ++       P+L RK S  SS R +P          E + SQSVP R+F QSAP
Sbjct: 82  ATLPDSDQNMTIETPPMLNRKTSFPSSIRAVPAIPKPPHISLENKHSQSVPIRRFHQSAP 141

Query: 45  MNVRLMPR 22
           MN+ ++ +
Sbjct: 142 MNIPVLSK 149


Top