BLASTX nr result
ID: Panax21_contig00033559
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00033559
(514 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003591979.1| Pentatricopeptide repeat-containing protein ... 81 8e-14
ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containi... 79 5e-13
ref|NP_190938.1| pentatricopeptide repeat-containing protein [Ar... 73 2e-11
ref|XP_002885504.1| pentatricopeptide repeat-containing protein ... 73 2e-11
ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arab... 73 2e-11
>ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 873
Score = 81.3 bits (199), Expect = 8e-14
Identities = 47/159 (29%), Positives = 80/159 (50%)
Frame = +1
Query: 19 GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
GY K ++LKE +I + +G +P++ Y T R LC+ G++DEA L KM + VP
Sbjct: 290 GYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVP 349
Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
++ Y + I F + A + + +G+ E +I C +GK+DEA +
Sbjct: 350 DVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVM 409
Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRM 495
++ V GF+ N +++ Y K G++AEA + M
Sbjct: 410 VKM-VESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEM 447
Score = 58.5 bits (140), Expect = 5e-07
Identities = 44/165 (26%), Positives = 72/165 (43%)
Frame = +1
Query: 19 GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
GY K E ++ ++ G V I+ Y T R LC G+ D+A L ++++ VP
Sbjct: 500 GYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVP 559
Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
+ I E A +F N + L ++ GLC +G L++ + +F
Sbjct: 560 DESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLF 619
Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMKDANYE 513
N + G + N I+SS+ KE R+ +A L M+ N E
Sbjct: 620 N-TWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLE 663
Score = 57.0 bits (136), Expect = 2e-06
Identities = 39/152 (25%), Positives = 69/152 (45%)
Frame = +1
Query: 19 GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
GY K + E +++ ++ +G + T ++C +LD+A L K K +
Sbjct: 430 GYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYIL 489
Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
+ YG+ I F + + A++ + ++ G+V +I GLC GK D+AV
Sbjct: 490 DEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKL 549
Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEA 474
NE+ + G + N I+ Y EG V +A
Sbjct: 550 NEL-LEKGLVPDESTSNIIIHGYCWEGAVEKA 580
>ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED:
pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 78.6 bits (192), Expect = 5e-13
Identities = 44/160 (27%), Positives = 82/160 (51%)
Frame = +1
Query: 19 GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
G+ K E L ++ ++ S+G P ++ Y + LCN G+L+EA+VLL +M+ S P
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKP 371
Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
+ Y + I E+A F+ K+GL ++ G C+ GK++EA +
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF-LL 430
Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMK 498
++ + GF ++ NC++ + +EG++ E + L M+
Sbjct: 431 QKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQ 470
>ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis
thaliana] gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400
[Arabidopsis thaliana] gi|332645608|gb|AEE79129.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 754
Score = 73.2 bits (178), Expect = 2e-11
Identities = 43/160 (26%), Positives = 74/160 (46%)
Frame = +1
Query: 19 GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
G K +KE ++ Q+ + P + Y T +LC +++EA L + + +P
Sbjct: 339 GLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 398
Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
++C + S I+ L L A+ F R KG + +I LC KGKLDEA+ +
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNML 458
Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMK 498
++ + G A N ++ + K + EAE +F M+
Sbjct: 459 KQME-LSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497
>ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297331344|gb|EFH61763.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 618
Score = 73.2 bits (178), Expect = 2e-11
Identities = 42/160 (26%), Positives = 81/160 (50%)
Frame = +1
Query: 22 YKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVPE 201
Y K + + G R+ +++S+G V + + Y T + C G+L+ A+ L ++M+ P
Sbjct: 394 YCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPS 453
Query: 202 LCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIFN 381
+ YG + L + A+ F +K ++ GI +I G+C K+D+A +F
Sbjct: 454 VVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFC 513
Query: 382 EIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMKD 501
++V G + N ++ K+G ++EA+ LF +MK+
Sbjct: 514 SLSVKGVKPDVLTY-NVMIGGLCKKGSLSEADMLFRKMKE 552
Score = 56.2 bits (134), Expect = 3e-06
Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Frame = +1
Query: 19 GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
G+ ++ L + + ++ S G P ++ Y LC+ G L +A + +KM KSR +
Sbjct: 428 GFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMIL 487
Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIV-GLCEKGKLDEAVRI 375
+ +Y I + A++ +DA F KG V+ D + V++ GLC+KG L EA +
Sbjct: 488 GIGIYNIIIHGMCNASKVDDAWSLFCSLSVKG-VKPDVLTYNVMIGGLCKKGSLSEADML 546
Query: 376 FNEI 387
F ++
Sbjct: 547 FRKM 550
Score = 55.8 bits (133), Expect = 3e-06
Identities = 32/120 (26%), Positives = 53/120 (44%)
Frame = +1
Query: 40 LKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVPELCVYGS 219
L E + + ++ + G P+ + Y + C RL EA +L M+ P + Y
Sbjct: 330 LLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSI 389
Query: 220 FIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIFNEIAVIG 399
I + A R ++ +R F KGLV ++ G C+ GKL+ A +F E+ G
Sbjct: 390 LINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRG 449
>ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata] gi|297322059|gb|EFH52480.1| hypothetical protein
ARALYDRAFT_906766 [Arabidopsis lyrata subsp. lyrata]
Length = 754
Score = 73.2 bits (178), Expect = 2e-11
Identities = 43/160 (26%), Positives = 74/160 (46%)
Frame = +1
Query: 19 GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
G K +KE + Q+ + P + Y T +LC +++EA L + + +P
Sbjct: 339 GLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 398
Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
++C + S I+ L L A+ F R KG + +I LC KGKLDEA+ +
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNML 458
Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMK 498
++ + G A N ++ + K ++ EAE +F M+
Sbjct: 459 KQME-LSGCARSVITYNTLIDGFCKANKIREAEEIFDEME 497