BLASTX nr result

ID: Panax21_contig00033559 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033559
         (514 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003591979.1| Pentatricopeptide repeat-containing protein ...    81   8e-14
ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containi...    79   5e-13
ref|NP_190938.1| pentatricopeptide repeat-containing protein [Ar...    73   2e-11
ref|XP_002885504.1| pentatricopeptide repeat-containing protein ...    73   2e-11
ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arab...    73   2e-11

>ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355481027|gb|AES62230.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 873

 Score = 81.3 bits (199), Expect = 8e-14
 Identities = 47/159 (29%), Positives = 80/159 (50%)
 Frame = +1

Query: 19  GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
           GY K ++LKE   +I  +  +G +P++  Y T  R LC+ G++DEA  L  KM   + VP
Sbjct: 290 GYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVP 349

Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
           ++  Y + I   F     + A +     + +G+ E       +I   C +GK+DEA  + 
Sbjct: 350 DVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVM 409

Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRM 495
            ++ V  GF+      N +++ Y K G++AEA  +   M
Sbjct: 410 VKM-VESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEM 447



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 44/165 (26%), Positives = 72/165 (43%)
 Frame = +1

Query: 19  GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
           GY K E      ++  ++   G V  I+ Y T  R LC  G+ D+A   L ++++   VP
Sbjct: 500 GYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVP 559

Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
           +       I         E A +F N   +  L         ++ GLC +G L++ + +F
Sbjct: 560 DESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGLTLF 619

Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMKDANYE 513
           N   +  G    +   N I+SS+ KE R+ +A  L   M+  N E
Sbjct: 620 N-TWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLE 663



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 39/152 (25%), Positives = 69/152 (45%)
 Frame = +1

Query: 19  GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
           GY K   + E  +++ ++  +G   +     T   ++C   +LD+A  L  K  K   + 
Sbjct: 430 GYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYIL 489

Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
           +   YG+ I   F   + + A++ +   ++ G+V        +I GLC  GK D+AV   
Sbjct: 490 DEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKL 549

Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEA 474
           NE+ +  G     +  N I+  Y  EG V +A
Sbjct: 550 NEL-LEKGLVPDESTSNIIIHGYCWEGAVEKA 580


>ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
           gi|449524964|ref|XP_004169491.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 44/160 (27%), Positives = 82/160 (51%)
 Frame = +1

Query: 19  GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
           G+ K E L    ++  ++ S+G  P ++ Y +    LCN G+L+EA+VLL +M+ S   P
Sbjct: 312 GFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKP 371

Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
            +  Y + I         E+A   F+   K+GL         ++ G C+ GK++EA  + 
Sbjct: 372 NVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAF-LL 430

Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMK 498
            ++ +  GF   ++  NC++  + +EG++ E + L   M+
Sbjct: 431 QKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQ 470


>ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
           gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis
           thaliana] gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400
           [Arabidopsis thaliana] gi|332645608|gb|AEE79129.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 754

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 43/160 (26%), Positives = 74/160 (46%)
 Frame = +1

Query: 19  GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
           G  K   +KE   ++ Q+ +    P  + Y T   +LC   +++EA  L + +     +P
Sbjct: 339 GLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 398

Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
           ++C + S I+ L L      A+  F   R KG    +     +I  LC KGKLDEA+ + 
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNML 458

Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMK 498
            ++  + G A      N ++  + K  +  EAE +F  M+
Sbjct: 459 KQME-LSGCARSVITYNTLIDGFCKANKTREAEEIFDEME 497


>ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297331344|gb|EFH61763.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 618

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 42/160 (26%), Positives = 81/160 (50%)
 Frame = +1

Query: 22  YKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVPE 201
           Y K + +  G R+  +++S+G V + + Y T  +  C  G+L+ A+ L ++M+     P 
Sbjct: 394 YCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPS 453

Query: 202 LCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIFN 381
           +  YG  +  L      + A+  F   +K  ++   GI   +I G+C   K+D+A  +F 
Sbjct: 454 VVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFC 513

Query: 382 EIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMKD 501
            ++V G   +     N ++    K+G ++EA+ LF +MK+
Sbjct: 514 SLSVKGVKPDVLTY-NVMIGGLCKKGSLSEADMLFRKMKE 552



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 36/124 (29%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
 Frame = +1

Query: 19  GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
           G+ ++  L   + +  ++ S G  P ++ Y      LC+ G L +A  + +KM KSR + 
Sbjct: 428 GFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMIL 487

Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIV-GLCEKGKLDEAVRI 375
            + +Y   I  +  A++ +DA   F     KG V+ D +   V++ GLC+KG L EA  +
Sbjct: 488 GIGIYNIIIHGMCNASKVDDAWSLFCSLSVKG-VKPDVLTYNVMIGGLCKKGSLSEADML 546

Query: 376 FNEI 387
           F ++
Sbjct: 547 FRKM 550



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 32/120 (26%), Positives = 53/120 (44%)
 Frame = +1

Query: 40  LKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVPELCVYGS 219
           L E + +  ++ + G  P+ + Y +     C   RL EA  +L  M+     P +  Y  
Sbjct: 330 LLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSI 389

Query: 220 FIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIFNEIAVIG 399
            I +   A R ++ +R F     KGLV        ++ G C+ GKL+ A  +F E+   G
Sbjct: 390 LINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRG 449


>ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata] gi|297322059|gb|EFH52480.1| hypothetical protein
           ARALYDRAFT_906766 [Arabidopsis lyrata subsp. lyrata]
          Length = 754

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 43/160 (26%), Positives = 74/160 (46%)
 Frame = +1

Query: 19  GYKKTEFLKEGRRIIFQLNSEGSVPEIMAYETYFRSLCNVGRLDEAEVLLKKMMKSRTVP 198
           G  K   +KE    + Q+ +    P  + Y T   +LC   +++EA  L + +     +P
Sbjct: 339 GLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 398

Query: 199 ELCVYGSFIRALFLAARDEDAIRFFNVERKKGLVEVDGIARYVIVGLCEKGKLDEAVRIF 378
           ++C + S I+ L L      A+  F   R KG    +     +I  LC KGKLDEA+ + 
Sbjct: 399 DVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNML 458

Query: 379 NEIAVIGGFANCSNVCNCILSSYWKEGRVAEAECLFGRMK 498
            ++  + G A      N ++  + K  ++ EAE +F  M+
Sbjct: 459 KQME-LSGCARSVITYNTLIDGFCKANKIREAEEIFDEME 497


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