BLASTX nr result

ID: Panax21_contig00033452 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033452
         (618 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306723.1| predicted protein [Populus trichocarpa] gi|2...    81   1e-13
ref|XP_002302157.1| predicted protein [Populus trichocarpa] gi|2...    80   2e-13
ref|XP_002527086.1| conserved hypothetical protein [Ricinus comm...    69   5e-10
ref|XP_002263508.2| PREDICTED: uncharacterized protein LOC100240...    69   7e-10
ref|XP_004140950.1| PREDICTED: 30S ribosomal protein S1 homolog ...    67   2e-09

>ref|XP_002306723.1| predicted protein [Populus trichocarpa] gi|222856172|gb|EEE93719.1|
           predicted protein [Populus trichocarpa]
          Length = 296

 Score = 81.3 bits (199), Expect = 1e-13
 Identities = 63/201 (31%), Positives = 83/201 (41%), Gaps = 4/201 (1%)
 Frame = +2

Query: 26  MSVLPHSCKSFTLLNPSLP--LNNFIIYNTTTQNRATSSFPICSIAKSKTPRKFTSVSIN 199
           M  L   CKS T+ + SLP   NN +I  ++             + ++K P+   S   +
Sbjct: 1   MQTLLQPCKSLTIFSSSLPPHSNNLVITQSSI------------VHQNKCPK---SPCFH 45

Query: 200 GSCGSLIINANCSVLRSTHVSVCSKSDAFDEFITIHLDEDTRSDGNXXXXXXXXXXLLNK 379
             C S     N  + RS H+S+CS++DAFD+F +  L E  + D            LLNK
Sbjct: 46  SFCTSGTSAKNPPLWRSAHISLCSQNDAFDDFSSTQLPEKAQDD---RIQENEELELLNK 102

Query: 380 PFPKTISNGYVVEVEPELRKLYKEEVLEPFLKFFKPRD--XXXXXXXXXXXXXXXXXXXX 553
           P P   +NG  VE   E  K  K+E L PFLKFFK  D                      
Sbjct: 103 PSPVVFNNGLDVEAVKESEKPGKDEALAPFLKFFKSNDSLDGVSEDDGDSGVVEERIDMD 162

Query: 554 XXXXXXXXXXXXYYKPKPGDF 616
                       YY PKPGDF
Sbjct: 163 NEDKEARKINVDYYNPKPGDF 183


>ref|XP_002302157.1| predicted protein [Populus trichocarpa] gi|222843883|gb|EEE81430.1|
           predicted protein [Populus trichocarpa]
          Length = 486

 Score = 80.5 bits (197), Expect = 2e-13
 Identities = 61/197 (30%), Positives = 84/197 (42%), Gaps = 2/197 (1%)
 Frame = +2

Query: 32  VLPHSCKSFTLLNPSLPLNNFIIYNTTTQNRATSSFPICSIAKSKTPRKFTSVSINGSCG 211
           +L   CKS TL + SLP N   +  T  ++       I    K   P  F S    G+  
Sbjct: 4   LLLQPCKSLTLFSYSLPSNTDSLVITHKRS-------IVHHNKCAKPPCFHSFCSLGTLK 56

Query: 212 SLIINANCSVLRSTHVSVCSKSDAFDEFITIHLDEDTRSDGNXXXXXXXXXXLLNKPFPK 391
           ++ ++ N  + +S+ V++CS++D FD+F +  L E  R D            LLNKP P 
Sbjct: 57  AIFLSKNSQLWKSSLVTLCSQNDVFDDFSSTQLPEKERDD---RIQVNEELELLNKPSPV 113

Query: 392 TISNGYVVEVEPELRKLYKEEVLEPFLKFFKPRD--XXXXXXXXXXXXXXXXXXXXXXXX 565
             +NG  VE + E  K  K+E L PFLKFFK  D                          
Sbjct: 114 IFNNGLDVEADKESEKPGKDEALAPFLKFFKSNDSLDEVSEDERDLGVVEERSGVDNEDK 173

Query: 566 XXXXXXXXYYKPKPGDF 616
                   YY+PKPGDF
Sbjct: 174 EPRKINVDYYEPKPGDF 190


>ref|XP_002527086.1| conserved hypothetical protein [Ricinus communis]
           gi|223533509|gb|EEF35249.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 476

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 44/133 (33%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
 Frame = +2

Query: 224 NANCSVLRSTHVSVCSKSDAFDEFITIHLDEDTRSDGNXXXXXXXXXXLLNKPFPKTISN 403
           +AN     ST +S CS++D FD   +  + E+   D            LLNKP P  I+N
Sbjct: 11  DANPFSALSTQISFCSQNDTFDNLSSTQVPEEQEED---RIRENEELELLNKPSPVVINN 67

Query: 404 GYVVEVEPELRKLYKEEVLEPFLKFFKPRD--XXXXXXXXXXXXXXXXXXXXXXXXXXXX 577
           G  +EV+ E   + K+E L PFLKFF+PRD                              
Sbjct: 68  GLSIEVDKESETIDKDEALAPFLKFFEPRDSLEEIKEEGKELGVIEGNSNGNNEDKEAKK 127

Query: 578 XXXXYYKPKPGDF 616
               YY+PKPGDF
Sbjct: 128 VNVDYYEPKPGDF 140


>ref|XP_002263508.2| PREDICTED: uncharacterized protein LOC100240915 [Vitis vinifera]
          Length = 513

 Score = 68.9 bits (167), Expect = 7e-10
 Identities = 44/135 (32%), Positives = 60/135 (44%)
 Frame = +2

Query: 212 SLIINANCSVLRSTHVSVCSKSDAFDEFITIHLDEDTRSDGNXXXXXXXXXXLLNKPFPK 391
           +L+   N  V R+T +S CS +D F +  +  L E    DG           LL KP P 
Sbjct: 46  TLVSPKNSPVWRTTQISFCSPNDIFYDISSTQLPETPEIDG---VQDIEELELLGKPSPV 102

Query: 392 TISNGYVVEVEPELRKLYKEEVLEPFLKFFKPRDXXXXXXXXXXXXXXXXXXXXXXXXXX 571
            ++NG   +++ EL+K  K+E L PFLKFFKPR+                          
Sbjct: 103 PLNNGSASDIDSELKKPDKDEALAPFLKFFKPRE----SSEEANGASGEDGSEISESGST 158

Query: 572 XXXXXXYYKPKPGDF 616
                 YY+PKPGDF
Sbjct: 159 KLVSVEYYEPKPGDF 173


>ref|XP_004140950.1| PREDICTED: 30S ribosomal protein S1 homolog A-like [Cucumis
           sativus]
          Length = 530

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 2/191 (1%)
 Frame = +2

Query: 47  CKSFTLLNPSLPLNNFIIYNTTTQNRATSSFPICSIAKSKTPRKFTSVSINGSCGSLIIN 226
           CK   + N S    +F++ + + +N A  + P   + +       ++ + + +C     +
Sbjct: 10  CKYLCVPNSSFESQDFLVSSNSVRNSAFLAVPRLPVQRISNSNLCSTSTCSDNCNK---S 66

Query: 227 ANCSVLRSTHVSVCSKSDAFDEFITIHLDEDTRSDGNXXXXXXXXXXLLNKPFPKTISNG 406
              +  R + V  CS++D FD   +  L +  R DG           LLNKP P  ISNG
Sbjct: 67  KKLTFRRRSSVLFCSRNDIFDNLSSTQLPDKPRVDG---IQEIDEIGLLNKPSPAPISNG 123

Query: 407 YVVEVEPELRKLYKEEVLEPFLKFFKPRD--XXXXXXXXXXXXXXXXXXXXXXXXXXXXX 580
              E++ E+    + E L PF+KFFK +D                               
Sbjct: 124 VSSEIDQEVENPDENEALAPFMKFFKNKDSADEKEEEERALRAFEETIDGDDETEIANKL 183

Query: 581 XXXYYKPKPGD 613
              YY+PKPGD
Sbjct: 184 NVEYYEPKPGD 194


Top