BLASTX nr result

ID: Panax21_contig00033436 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033436
         (494 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|2...    74   2e-13
ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|2...    74   3e-13
ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|2...    72   5e-13
ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|2...    72   6e-13
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript...    74   1e-11

>ref|XP_002332211.1| predicted protein [Populus trichocarpa] gi|222874875|gb|EEF12006.1|
            predicted protein [Populus trichocarpa]
          Length = 1386

 Score = 74.3 bits (181), Expect(2) = 2e-13
 Identities = 28/67 (41%), Positives = 45/67 (67%)
 Frame = +3

Query: 231  QWHKLIWNKLHIPRYSFIMWLAIIQKLQTLDQIVQYSHNVDPSCVLCIHNTGSHAHLFFE 410
            +WH ++W K  +PR+SF++W+A+ QKL T D++ ++  +    C LC+ N   H HLFFE
Sbjct: 1214 EWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLYRFGIHGPNRCSLCLRNNEDHNHLFFE 1273

Query: 411  CEFSHAI 431
            C ++ AI
Sbjct: 1274 CSYTKAI 1280



 Score = 25.8 bits (55), Expect(2) = 2e-13
 Identities = 14/72 (19%), Positives = 30/72 (41%)
 Frame = +1

Query: 7    SRIGPKARVKGILSADGWQLPSSNHRIMIQFRQSFDFSINFNVNSKDKITWGSSRMSKVT 186
            S +   A+V  ++    W+ P++         ++   + N  +  KD+I W  S   +  
Sbjct: 1139 SGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDEIVWLDSPNHRFL 1198

Query: 187  DAIIWQTIRSKR 222
              + W+ +R  R
Sbjct: 1199 VKVAWEHLRRHR 1210


>ref|XP_002331075.1| predicted protein [Populus trichocarpa] gi|222873039|gb|EEF10170.1|
           predicted protein [Populus trichocarpa]
          Length = 517

 Score = 73.6 bits (179), Expect(2) = 3e-13
 Identities = 28/67 (41%), Positives = 45/67 (67%)
 Frame = +3

Query: 231 QWHKLIWNKLHIPRYSFIMWLAIIQKLQTLDQIVQYSHNVDPSCVLCIHNTGSHAHLFFE 410
           +WH ++W K  +PR+SF++W+A+ QKL T D++ ++  +    C LC+ N   H HLFFE
Sbjct: 341 EWHDIVWFKNAVPRHSFLLWMAVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFE 400

Query: 411 CEFSHAI 431
           C ++ AI
Sbjct: 401 CSYTKAI 407



 Score = 26.2 bits (56), Expect(2) = 3e-13
 Identities = 13/72 (18%), Positives = 31/72 (43%)
 Frame = +1

Query: 7   SRIGPKARVKGILSADGWQLPSSNHRIMIQFRQSFDFSINFNVNSKDKITWGSSRMSKVT 186
           S +   A+V  ++    W+ P++         ++   + N  +  KD++ W  S   + +
Sbjct: 266 SGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDELVWLDSPNHRFS 325

Query: 187 DAIIWQTIRSKR 222
             + W+ +R  R
Sbjct: 326 VKVAWEQLRRHR 337


>ref|XP_002313562.1| predicted protein [Populus trichocarpa] gi|222849970|gb|EEE87517.1|
           predicted protein [Populus trichocarpa]
          Length = 331

 Score = 72.0 bits (175), Expect(2) = 5e-13
 Identities = 27/67 (40%), Positives = 44/67 (65%)
 Frame = +3

Query: 231 QWHKLIWNKLHIPRYSFIMWLAIIQKLQTLDQIVQYSHNVDPSCVLCIHNTGSHAHLFFE 410
           +WH ++W K  +PR+SF++W+ + QKL T D++ ++  +    C LC+ N   H HLFFE
Sbjct: 159 EWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFE 218

Query: 411 CEFSHAI 431
           C ++ AI
Sbjct: 219 CSYTKAI 225



 Score = 26.9 bits (58), Expect(2) = 5e-13
 Identities = 14/72 (19%), Positives = 31/72 (43%)
 Frame = +1

Query: 7   SRIGPKARVKGILSADGWQLPSSNHRIMIQFRQSFDFSINFNVNSKDKITWGSSRMSKVT 186
           S +   A+V  ++    W+ P++         ++   + N  +  KD+I W  S   + +
Sbjct: 84  SGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDEIVWLDSPNHRFS 143

Query: 187 DAIIWQTIRSKR 222
             + W+ +R  R
Sbjct: 144 VKVAWEQLRRHR 155


>ref|XP_002329612.1| predicted protein [Populus trichocarpa] gi|222870351|gb|EEF07482.1|
            predicted protein [Populus trichocarpa]
          Length = 1046

 Score = 72.0 bits (175), Expect(2) = 6e-13
 Identities = 27/67 (40%), Positives = 44/67 (65%)
 Frame = +3

Query: 231  QWHKLIWNKLHIPRYSFIMWLAIIQKLQTLDQIVQYSHNVDPSCVLCIHNTGSHAHLFFE 410
            +WH ++W K  +PR+SF++W+ + QKL T D++ ++  +    C LC+ N   H HLFFE
Sbjct: 874  EWHDIVWFKNAVPRHSFLLWMVVQQKLTTQDKLHRFGIHGPNRCSLCLRNNEDHNHLFFE 933

Query: 411  CEFSHAI 431
            C ++ AI
Sbjct: 934  CSYTKAI 940



 Score = 26.6 bits (57), Expect(2) = 6e-13
 Identities = 14/72 (19%), Positives = 31/72 (43%)
 Frame = +1

Query: 7    SRIGPKARVKGILSADGWQLPSSNHRIMIQFRQSFDFSINFNVNSKDKITWGSSRMSKVT 186
            S +   A+V  ++    W+ P++         ++   + N  +  KD+I W  S   + +
Sbjct: 799  SGMAKNAKVNVLIQNSEWKTPTTQAIGWHPIIEAIPSNSNPKMGQKDEIIWLDSPNHRFS 858

Query: 187  DAIIWQTIRSKR 222
              + W+ +R  R
Sbjct: 859  VKVAWEQLRRHR 870


>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 295

 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 31/71 (43%), Positives = 47/71 (66%)
 Frame = +3

Query: 219 TPPAQWHKLIWNKLHIPRYSFIMWLAIIQKLQTLDQIVQYSHNVDPSCVLCIHNTGSHAH 398
           +P   W K++W K +IPR+S I W++ +++L T D++  +  N+  S VLC +   +HAH
Sbjct: 122 SPTVPWAKVVWFKEYIPRFSLITWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAH 181

Query: 399 LFFECEFSHAI 431
           LFFEC FS AI
Sbjct: 182 LFFECSFSLAI 192


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