BLASTX nr result

ID: Panax21_contig00033341 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033341
         (626 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002520700.1| RNA binding protein, putative [Ricinus commu...   297   9e-79
ref|XP_003632354.1| PREDICTED: CUGBP Elav-like family member 5 i...   282   3e-74
ref|XP_002270390.1| PREDICTED: CUGBP Elav-like family member 5 i...   282   3e-74
emb|CAN71673.1| hypothetical protein VITISV_044358 [Vitis vinifera]   282   3e-74
ref|XP_002320377.1| predicted protein [Populus trichocarpa] gi|2...   272   4e-71

>ref|XP_002520700.1| RNA binding protein, putative [Ricinus communis]
           gi|223540085|gb|EEF41662.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 436

 Score =  297 bits (761), Expect = 9e-79
 Identities = 148/209 (70%), Positives = 163/209 (77%), Gaps = 1/209 (0%)
 Frame = +3

Query: 3   KHKMEGSTVPLVVKWADSEKERQARRAQKGQSQPPNMANADSPQHPSLFGALPMGYISSY 182
           KHKMEGS+VPLVVKWAD+EKERQARRAQK QSQ  N+ NADS QHPSLFGALPMGY+  Y
Sbjct: 166 KHKMEGSSVPLVVKWADTEKERQARRAQKVQSQASNLPNADS-QHPSLFGALPMGYVPQY 224

Query: 183 NGYGYQAPGTYGLMQYRLPPLQNQHAFHNMLAPLNQGNALR-GVTPDLAPGMAPRNYTLP 359
           NGYGYQAPGTYGLM YRLPPLQ+Q AFH+++ P+NQGNALR GV PDL P M PRNY LP
Sbjct: 225 NGYGYQAPGTYGLMPYRLPPLQSQPAFHSIIPPVNQGNALRGGVRPDLGPSMGPRNYALP 284

Query: 360 PASYVGSSYPSVTGVHYPLAYPGGMMGNRPLSGXXXXXXXXXXXXXXXXXXXXXXXXXGG 539
           PASYVGS+YP+V G+ YP+AYPGGMM  RPLS                          GG
Sbjct: 285 PASYVGSAYPAVPGIQYPMAYPGGMMSPRPLSS-SPGAVSPTVGSSNSATSSGVSSSSGG 343

Query: 540 QLEGPPGANLFIYHIPQEFGDQELANAFQ 626
           QLEGPPG+NLFIYHIPQEFGDQELA+AFQ
Sbjct: 344 QLEGPPGSNLFIYHIPQEFGDQELASAFQ 372


>ref|XP_003632354.1| PREDICTED: CUGBP Elav-like family member 5 isoform 2 [Vitis
           vinifera]
          Length = 447

 Score =  282 bits (722), Expect = 3e-74
 Identities = 133/208 (63%), Positives = 161/208 (77%)
 Frame = +3

Query: 3   KHKMEGSTVPLVVKWADSEKERQARRAQKGQSQPPNMANADSPQHPSLFGALPMGYISSY 182
           KHKMEGS+VPLVVKWAD+EKERQAR+AQK QSQ  N+ +ADS QHPSLFGALP+GY+  Y
Sbjct: 176 KHKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNLPSADSGQHPSLFGALPLGYVPPY 235

Query: 183 NGYGYQAPGTYGLMQYRLPPLQNQHAFHNMLAPLNQGNALRGVTPDLAPGMAPRNYTLPP 362
           NGYGYQAPG YGLMQYR+PP+Q+Q AFHNM+  +NQG+A+R + PDLA  +APRNY +P 
Sbjct: 236 NGYGYQAPGAYGLMQYRMPPMQSQAAFHNMIPQVNQGSAMRAIAPDLARAVAPRNYAVPS 295

Query: 363 ASYVGSSYPSVTGVHYPLAYPGGMMGNRPLSGXXXXXXXXXXXXXXXXXXXXXXXXXGGQ 542
           ASY+GS+YP++ G+ YP+AY GG+M ++PLSG                         GGQ
Sbjct: 296 ASYMGSAYPALPGLQYPMAYHGGIMSHQPLSG-SPGSRPPAMMTSNSPTNSGAGASSGGQ 354

Query: 543 LEGPPGANLFIYHIPQEFGDQELANAFQ 626
           +EGPPGANLFIYHIPQEFGD ELA+AFQ
Sbjct: 355 VEGPPGANLFIYHIPQEFGDHELAHAFQ 382


>ref|XP_002270390.1| PREDICTED: CUGBP Elav-like family member 5 isoform 1 [Vitis
           vinifera] gi|296086641|emb|CBI32276.3| unnamed protein
           product [Vitis vinifera]
          Length = 437

 Score =  282 bits (722), Expect = 3e-74
 Identities = 133/208 (63%), Positives = 161/208 (77%)
 Frame = +3

Query: 3   KHKMEGSTVPLVVKWADSEKERQARRAQKGQSQPPNMANADSPQHPSLFGALPMGYISSY 182
           KHKMEGS+VPLVVKWAD+EKERQAR+AQK QSQ  N+ +ADS QHPSLFGALP+GY+  Y
Sbjct: 166 KHKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNLPSADSGQHPSLFGALPLGYVPPY 225

Query: 183 NGYGYQAPGTYGLMQYRLPPLQNQHAFHNMLAPLNQGNALRGVTPDLAPGMAPRNYTLPP 362
           NGYGYQAPG YGLMQYR+PP+Q+Q AFHNM+  +NQG+A+R + PDLA  +APRNY +P 
Sbjct: 226 NGYGYQAPGAYGLMQYRMPPMQSQAAFHNMIPQVNQGSAMRAIAPDLARAVAPRNYAVPS 285

Query: 363 ASYVGSSYPSVTGVHYPLAYPGGMMGNRPLSGXXXXXXXXXXXXXXXXXXXXXXXXXGGQ 542
           ASY+GS+YP++ G+ YP+AY GG+M ++PLSG                         GGQ
Sbjct: 286 ASYMGSAYPALPGLQYPMAYHGGIMSHQPLSG-SPGSRPPAMMTSNSPTNSGAGASSGGQ 344

Query: 543 LEGPPGANLFIYHIPQEFGDQELANAFQ 626
           +EGPPGANLFIYHIPQEFGD ELA+AFQ
Sbjct: 345 VEGPPGANLFIYHIPQEFGDHELAHAFQ 372


>emb|CAN71673.1| hypothetical protein VITISV_044358 [Vitis vinifera]
          Length = 450

 Score =  282 bits (722), Expect = 3e-74
 Identities = 133/208 (63%), Positives = 161/208 (77%)
 Frame = +3

Query: 3   KHKMEGSTVPLVVKWADSEKERQARRAQKGQSQPPNMANADSPQHPSLFGALPMGYISSY 182
           KHKMEGS+VPLVVKWAD+EKERQAR+AQK QSQ  N+ +ADS QHPSLFGALP+GY+  Y
Sbjct: 220 KHKMEGSSVPLVVKWADTEKERQARKAQKAQSQASNLPSADSGQHPSLFGALPLGYVPPY 279

Query: 183 NGYGYQAPGTYGLMQYRLPPLQNQHAFHNMLAPLNQGNALRGVTPDLAPGMAPRNYTLPP 362
           NGYGYQAPG YGLMQYR+PP+Q+Q AFHNM+  +NQG+A+R + PDLA  +APRNY +P 
Sbjct: 280 NGYGYQAPGAYGLMQYRMPPMQSQAAFHNMIPQVNQGSAMRAIAPDLARAVAPRNYAVPS 339

Query: 363 ASYVGSSYPSVTGVHYPLAYPGGMMGNRPLSGXXXXXXXXXXXXXXXXXXXXXXXXXGGQ 542
           ASY+GS+YP++ G+ YP+AY GG+M ++PLSG                         GGQ
Sbjct: 340 ASYMGSAYPALPGLQYPMAYHGGIMSHQPLSG-SPGSRPPAMMTSNSPTNSGAGASSGGQ 398

Query: 543 LEGPPGANLFIYHIPQEFGDQELANAFQ 626
           +EGPPGANLFIYHIPQEFGD ELA+AFQ
Sbjct: 399 VEGPPGANLFIYHIPQEFGDHELAHAFQ 426


>ref|XP_002320377.1| predicted protein [Populus trichocarpa] gi|222861150|gb|EEE98692.1|
           predicted protein [Populus trichocarpa]
          Length = 432

 Score =  272 bits (695), Expect = 4e-71
 Identities = 139/209 (66%), Positives = 158/209 (75%), Gaps = 1/209 (0%)
 Frame = +3

Query: 3   KHKMEGSTVPLVVKWADSEKERQARRAQKGQSQPPNMANADSPQHPSLFGALPMGYISSY 182
           KHKMEGS+VPLVVKWAD+EKERQARRAQK QSQ   M N DS QHPSLFGALPMGY   Y
Sbjct: 167 KHKMEGSSVPLVVKWADTEKERQARRAQKAQSQA--MPNTDS-QHPSLFGALPMGYAPPY 223

Query: 183 NGYGYQAPGTYGLMQYRLPPLQNQHAFHNMLAPLNQGNALR-GVTPDLAPGMAPRNYTLP 359
           NGYGYQAPG YGLM YRLPP+QNQ AFH+M+ P+NQGN LR G+ PDL+P ++PRNY   
Sbjct: 224 NGYGYQAPGVYGLMPYRLPPMQNQPAFHSMVPPVNQGNVLRGGIRPDLSPNISPRNYA-- 281

Query: 360 PASYVGSSYPSVTGVHYPLAYPGGMMGNRPLSGXXXXXXXXXXXXXXXXXXXXXXXXXGG 539
           PA+Y+GS+YP+VTG+ YP+AYPG MM +RPLS                          G 
Sbjct: 282 PATYMGSAYPTVTGLQYPVAYPGAMMTHRPLSS-SPGALSPTVVSSNSATPSGVGGSSGV 340

Query: 540 QLEGPPGANLFIYHIPQEFGDQELANAFQ 626
           Q+EGPPGANLFIYHIPQEFGDQELANAF+
Sbjct: 341 QVEGPPGANLFIYHIPQEFGDQELANAFE 369


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