BLASTX nr result

ID: Panax21_contig00033258 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033258
         (834 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEC10965.1| 50S ribosomal protein L29 [Camellia sinensis]          207   2e-51
ref|XP_003633349.1| PREDICTED: 50S ribosomal protein L29, chloro...   197   2e-48
ref|NP_201325.1| 50S ribosomal protein L29 [Arabidopsis thaliana...   191   2e-46
ref|NP_001236076.1| uncharacterized protein LOC100305741 [Glycin...   190   3e-46
ref|XP_002532831.1| 50S ribosomal protein L29, chloroplast precu...   186   6e-45

>gb|AEC10965.1| 50S ribosomal protein L29 [Camellia sinensis]
          Length = 178

 Score =  207 bits (527), Expect = 2e-51
 Identities = 117/162 (72%), Positives = 126/162 (77%), Gaps = 6/162 (3%)
 Frame = -1

Query: 789 MLSLSIASPSSVTFSAXXXXXXXXXXXXSFHGIRVAHVFPTRIPS----IRAPRSV--SS 628
           MLSLSIASPSSVT                FHGIR++H+ P R       +R P     S 
Sbjct: 1   MLSLSIASPSSVTLPPKPILSASSKST--FHGIRISHLCPARTALCARYVRNPSFFFFSL 58

Query: 627 AVMMAKKEEELKEIRGLTTEQINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVAR 448
            VMMAK+EEELKEIR  TTE+INEE+VDLKGELFMLRLQKSARNEFKSSEFRRMRKR+AR
Sbjct: 59  VVMMAKREEELKEIRTKTTEEINEEIVDLKGELFMLRLQKSARNEFKSSEFRRMRKRIAR 118

Query: 447 MLTVKRERELVEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 322
           MLTVKRERE+ EGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ
Sbjct: 119 MLTVKREREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 160


>ref|XP_003633349.1| PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Vitis
           vinifera]
          Length = 161

 Score =  197 bits (502), Expect = 2e-48
 Identities = 112/157 (71%), Positives = 121/157 (77%), Gaps = 1/157 (0%)
 Frame = -1

Query: 789 MLSLSIASPSSVTFSAXXXXXXXXXXXXSFHGIRVAHVFPT-RIPSIRAPRSVSSAVMMA 613
           M SLSIASPSS+                 F+GIR+    PT   PS R+P S SS VMMA
Sbjct: 1   MFSLSIASPSSLKIPPKTTSTFPKSS---FNGIRI----PTPNKPSFRSPSSSSSVVMMA 53

Query: 612 KKEEELKEIRGLTTEQINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVARMLTVK 433
           K+EEELKEIR  TTE++NEE+VDLKGEL MLRLQKS RNEFK SEF RMRKRVARMLTVK
Sbjct: 54  KREEELKEIRAKTTEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVK 113

Query: 432 RERELVEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 322
           RERE+ EGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ
Sbjct: 114 REREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 150


>ref|NP_201325.1| 50S ribosomal protein L29 [Arabidopsis thaliana]
           gi|46397023|sp|Q9FJP3.1|RK29_ARATH RecName: Full=50S
           ribosomal protein L29, chloroplastic; AltName:
           Full=CL29; Flags: Precursor gi|189096148|pdb|3BBO|Z
           Chain Z, Homology Model For The Spinach Chloroplast 50s
           Subunit Fitted To 9.4a Cryo-Em Map Of The 70s
           Chlororibosome gi|10178184|dbj|BAB11658.1| 50S ribosomal
           protein L29 [Arabidopsis thaliana]
           gi|15028327|gb|AAK76640.1| putative 50S ribosomal
           protein L29 [Arabidopsis thaliana]
           gi|19310703|gb|AAL85082.1| putative 50S ribosomal
           protein L29 [Arabidopsis thaliana]
           gi|21553790|gb|AAM62883.1| 50S ribosomal protein L29
           [Arabidopsis thaliana] gi|222424203|dbj|BAH20060.1|
           AT5G65220 [Arabidopsis thaliana]
           gi|332010642|gb|AED98025.1| 50S ribosomal protein L29
           [Arabidopsis thaliana]
          Length = 173

 Score =  191 bits (484), Expect = 2e-46
 Identities = 105/159 (66%), Positives = 118/159 (74%), Gaps = 3/159 (1%)
 Frame = -1

Query: 789 MLSLSIASPSSVTFSAXXXXXXXXXXXXSFHGIRVAHVFPTRIPSIRAPRSVS---SAVM 619
           MLSLSIA+P +                  FHG+R+ H    R+P+     S S   S VM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSS-FHGVRIQHQVSARVPAAATISSSSPKPSVVM 59

Query: 618 MAKKEEELKEIRGLTTEQINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVARMLT 439
           M+K+E ELKEIR  TTEQ+ EEVVDLKGELFMLRLQKSARNEFKSS+FRRM+K+VARMLT
Sbjct: 60  MSKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLT 119

Query: 438 VKRERELVEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 322
           VKRERE+ EGI KRLSRKLDRQWKKSIV RPPPSLKKLQ
Sbjct: 120 VKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQ 158


>ref|NP_001236076.1| uncharacterized protein LOC100305741 [Glycine max]
           gi|255626497|gb|ACU13593.1| unknown [Glycine max]
          Length = 161

 Score =  190 bits (483), Expect = 3e-46
 Identities = 107/156 (68%), Positives = 120/156 (76%)
 Frame = -1

Query: 789 MLSLSIASPSSVTFSAXXXXXXXXXXXXSFHGIRVAHVFPTRIPSIRAPRSVSSAVMMAK 610
           MLSLS+ASPSS T S              F+GI++       IP  +   SV   VMM+K
Sbjct: 1   MLSLSVASPSSSTIS---------FLPKPFNGIQLRRSATCSIPPTKCSASVP-VVMMSK 50

Query: 609 KEEELKEIRGLTTEQINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVARMLTVKR 430
           + EELKEIR +TTEQINEEVVDLKGEL MLRLQKSARNEFKSSEF RMRKR+ARMLTVKR
Sbjct: 51  RTEELKEIRQMTTEQINEEVVDLKGELVMLRLQKSARNEFKSSEFGRMRKRIARMLTVKR 110

Query: 429 ERELVEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 322
           ERE+ EGINKRLSRKLD++WKKSIVVRPPPSLKKL+
Sbjct: 111 EREIEEGINKRLSRKLDKKWKKSIVVRPPPSLKKLR 146


>ref|XP_002532831.1| 50S ribosomal protein L29, chloroplast precursor, putative [Ricinus
           communis] gi|223527398|gb|EEF29538.1| 50S ribosomal
           protein L29, chloroplast precursor, putative [Ricinus
           communis]
          Length = 164

 Score =  186 bits (472), Expect = 6e-45
 Identities = 107/161 (66%), Positives = 120/161 (74%), Gaps = 5/161 (3%)
 Frame = -1

Query: 789 MLSLSIASPSSVTFSAXXXXXXXXXXXXSFHGIRVAHV--FPTRIPSIRAPRSVSS---A 625
           MLSLSI S S    S              F GI++ H    P R+P ++   S S     
Sbjct: 1   MLSLSITSFSPKPLSPVPKSS--------FSGIQIRHTCSIPMRVP-VKTTWSFSGKPLV 51

Query: 624 VMMAKKEEELKEIRGLTTEQINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRVARM 445
           + M+K++EELKEIR ++TEQINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKR+ARM
Sbjct: 52  ITMSKRQEELKEIREMSTEQINEEVVDLKGELFMLRLQKSARNEFKSSEFRRMRKRIARM 111

Query: 444 LTVKRERELVEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQ 322
           LTVKRERE+ EGINKRLSRK DRQWKKSIVVRPPPSLKKLQ
Sbjct: 112 LTVKREREIEEGINKRLSRKFDRQWKKSIVVRPPPSLKKLQ 152


Top