BLASTX nr result

ID: Panax21_contig00033238 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033238
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15151.3| unnamed protein product [Vitis vinifera]              197   7e-49
ref|XP_002284415.1| PREDICTED: putative pre-mRNA-splicing factor...   197   7e-49
ref|XP_004155050.1| PREDICTED: LOW QUALITY PROTEIN: putative pre...   197   1e-48
ref|XP_004138188.1| PREDICTED: putative pre-mRNA-splicing factor...   197   1e-48
ref|XP_003527105.1| PREDICTED: putative pre-mRNA-splicing factor...   194   8e-48

>emb|CBI15151.3| unnamed protein product [Vitis vinifera]
          Length = 954

 Score =  197 bits (501), Expect = 7e-49
 Identities = 92/119 (77%), Positives = 108/119 (90%)
 Frame = +3

Query: 3   AETRELRYKKQIYDLVKKQSEEADDINEYRMPDAYDQDGGVNQEKRFSVAVERYRDSNAA 182
           AE RELRYK++IYDLVKK+SEE DDINEYRMPDAYDQ+GGVNQEKRFSVA++RYRDS+A 
Sbjct: 271 AEQRELRYKREIYDLVKKRSEETDDINEYRMPDAYDQEGGVNQEKRFSVALQRYRDSSAN 330

Query: 183 DKMNPFAEQEAWEDHQIGKATLKFGSKNRKQKSQDYEFVFENQIEFIQDEVMHGENYAE 359
           DKMNPFAEQEAWE+HQIGKATLKFGSK++ QKS DY+ VFE+QIEFI+  VM G+ + +
Sbjct: 331 DKMNPFAEQEAWEEHQIGKATLKFGSKDKNQKSDDYQLVFEDQIEFIKASVMDGDKFED 389


>ref|XP_002284415.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA
           helicase DHX16-like [Vitis vinifera]
          Length = 1056

 Score =  197 bits (501), Expect = 7e-49
 Identities = 92/119 (77%), Positives = 108/119 (90%)
 Frame = +3

Query: 3   AETRELRYKKQIYDLVKKQSEEADDINEYRMPDAYDQDGGVNQEKRFSVAVERYRDSNAA 182
           AE RELRYK++IYDLVKK+SEE DDINEYRMPDAYDQ+GGVNQEKRFSVA++RYRDS+A 
Sbjct: 271 AEQRELRYKREIYDLVKKRSEETDDINEYRMPDAYDQEGGVNQEKRFSVALQRYRDSSAN 330

Query: 183 DKMNPFAEQEAWEDHQIGKATLKFGSKNRKQKSQDYEFVFENQIEFIQDEVMHGENYAE 359
           DKMNPFAEQEAWE+HQIGKATLKFGSK++ QKS DY+ VFE+QIEFI+  VM G+ + +
Sbjct: 331 DKMNPFAEQEAWEEHQIGKATLKFGSKDKNQKSDDYQLVFEDQIEFIKASVMDGDKFED 389


>ref|XP_004155050.1| PREDICTED: LOW QUALITY PROTEIN: putative pre-mRNA-splicing factor
           ATP-dependent RNA helicase DHX16-like, partial [Cucumis
           sativus]
          Length = 1049

 Score =  197 bits (500), Expect = 1e-48
 Identities = 89/119 (74%), Positives = 110/119 (92%)
 Frame = +3

Query: 3   AETRELRYKKQIYDLVKKQSEEADDINEYRMPDAYDQDGGVNQEKRFSVAVERYRDSNAA 182
           AE REL+YKK+IY+LVKK+++EADDINEYRMP+AYDQ+GGVNQ+KRF+VA++RYRDS AA
Sbjct: 259 AEYRELKYKKEIYELVKKRTDEADDINEYRMPEAYDQEGGVNQDKRFAVAMQRYRDSGAA 318

Query: 183 DKMNPFAEQEAWEDHQIGKATLKFGSKNRKQKSQDYEFVFENQIEFIQDEVMHGENYAE 359
           DKMNPFAEQEAWE+HQIGKAT+KFGSKN+KQ S DY+FVFE+QIEFI+  VM G+ + +
Sbjct: 319 DKMNPFAEQEAWEEHQIGKATMKFGSKNKKQSSDDYQFVFEDQIEFIKASVMEGDEFVD 377


>ref|XP_004138188.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA
           helicase DHX16-like [Cucumis sativus]
          Length = 1055

 Score =  197 bits (500), Expect = 1e-48
 Identities = 89/119 (74%), Positives = 110/119 (92%)
 Frame = +3

Query: 3   AETRELRYKKQIYDLVKKQSEEADDINEYRMPDAYDQDGGVNQEKRFSVAVERYRDSNAA 182
           AE REL+YKK+IY+LVKK+++EADDINEYRMP+AYDQ+GGVNQ+KRF+VA++RYRDS AA
Sbjct: 265 AEYRELKYKKEIYELVKKRTDEADDINEYRMPEAYDQEGGVNQDKRFAVAMQRYRDSGAA 324

Query: 183 DKMNPFAEQEAWEDHQIGKATLKFGSKNRKQKSQDYEFVFENQIEFIQDEVMHGENYAE 359
           DKMNPFAEQEAWE+HQIGKAT+KFGSKN+KQ S DY+FVFE+QIEFI+  VM G+ + +
Sbjct: 325 DKMNPFAEQEAWEEHQIGKATMKFGSKNKKQSSDDYQFVFEDQIEFIKASVMEGDEFVD 383


>ref|XP_003527105.1| PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA
           helicase DHX16 isoform 1 [Glycine max]
          Length = 1044

 Score =  194 bits (492), Expect = 8e-48
 Identities = 90/117 (76%), Positives = 107/117 (91%)
 Frame = +3

Query: 3   AETRELRYKKQIYDLVKKQSEEADDINEYRMPDAYDQDGGVNQEKRFSVAVERYRDSNAA 182
           AE RELRYKK+IY+LVKK+SEEAD+ NEYRMP+AYDQ+GGVNQEKRFSVA++RYRD NA 
Sbjct: 261 AEYRELRYKKEIYELVKKRSEEADNANEYRMPEAYDQEGGVNQEKRFSVAMQRYRDLNAE 320

Query: 183 DKMNPFAEQEAWEDHQIGKATLKFGSKNRKQKSQDYEFVFENQIEFIQDEVMHGENY 353
           DKMNPFAEQEAWE+HQIGKATLKFGSKN+KQ S DY++VFE+QI+FI+  VM G+ +
Sbjct: 321 DKMNPFAEQEAWEEHQIGKATLKFGSKNKKQVSDDYQYVFEDQIDFIKASVMEGDKF 377


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