BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033176
         (711 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q68S16.1|RPOC2_PANGI RecName: Full=DNA-directed RNA polymeras...    76   8e-12
ref|YP_004935542.1| RNA polymerase beta'' subunit (chloroplast) ...    76   8e-12
ref|YP_086956.2| RNA polymerase beta'' subunit [Panax ginseng]         76   8e-12
ref|YP_007317238.1| RNA polymerase beta'' subunit (chloroplast) ...    73   7e-11
gb|ADD31159.1| RNA polymerase beta'' subunit protein [Rhododendr...    73   7e-11

>sp|Q68S16.1|RPOC2_PANGI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            gi|51235303|gb|AAT98499.1| RNA polymerase beta II subunit
            [Panax ginseng]
          Length = 1387

 Score = 75.9 bits (185), Expect = 8e-12
 Identities = 40/65 (61%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
 Frame = -1

Query: 552  KTKRGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQN*T 379
            +T R + ++   G   W  G    VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKN+N  
Sbjct: 1291 ETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNKNLF 1350

Query: 378  K*EMK 364
            + EM+
Sbjct: 1351 EGEMR 1355



 Score = 70.5 bits (171), Expect = 3e-10
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
 Frame = -2

Query: 707  RGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQ 552
            R + ++   G   W  G    VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKN+
Sbjct: 1294 RVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNK 1347


>ref|YP_004935542.1| RNA polymerase beta'' subunit (chloroplast) [Eleutherococcus
            senticosus] gi|347448196|gb|AEO92608.1| RNA polymerase
            beta'' subunit (chloroplast) [Eleutherococcus senticosus]
          Length = 1387

 Score = 75.9 bits (185), Expect = 8e-12
 Identities = 40/65 (61%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
 Frame = -1

Query: 552  KTKRGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQN*T 379
            +T R + ++   G   W  G    VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKN+N  
Sbjct: 1291 ETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNKNLF 1350

Query: 378  K*EMK 364
            + EM+
Sbjct: 1351 EGEMR 1355



 Score = 70.5 bits (171), Expect = 3e-10
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
 Frame = -2

Query: 707  RGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQ 552
            R + ++   G   W  G    VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKN+
Sbjct: 1294 RVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNK 1347


>ref|YP_086956.2| RNA polymerase beta'' subunit [Panax ginseng]
          Length = 1383

 Score = 75.9 bits (185), Expect = 8e-12
 Identities = 40/65 (61%), Positives = 47/65 (72%), Gaps = 2/65 (3%)
 Frame = -1

Query: 552  KTKRGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQN*T 379
            +T R + ++   G   W  G    VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKN+N  
Sbjct: 1287 ETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNKNLF 1346

Query: 378  K*EMK 364
            + EM+
Sbjct: 1347 EGEMR 1351



 Score = 70.5 bits (171), Expect = 3e-10
 Identities = 36/54 (66%), Positives = 40/54 (74%), Gaps = 2/54 (3%)
 Frame = -2

Query: 707  RGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQ 552
            R + ++   G   W  G    VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKN+
Sbjct: 1290 RVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNK 1343


>ref|YP_007317238.1| RNA polymerase beta'' subunit (chloroplast) [Camellia sinensis]
            gi|430728262|gb|AGA55586.1| RNA polymerase beta'' subunit
            (chloroplast) [Camellia sinensis]
          Length = 1378

 Score = 72.8 bits (177), Expect = 7e-11
 Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
 Frame = -1

Query: 552  KTKRGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQN*T 379
            +T R + ++   G   W  G    VVLGGMIPVGTGFKGL+PPSRQH NIPLETKN+N  
Sbjct: 1291 ETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLMPPSRQHNNIPLETKNKNLF 1350

Query: 378  K*EMK 364
            + EM+
Sbjct: 1351 EGEMR 1355



 Score = 67.4 bits (163), Expect = 3e-09
 Identities = 34/54 (62%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
 Frame = -2

Query: 707  RGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQ 552
            R + ++   G   W  G    VVLGGMIPVGTGFKGL+PPSRQH NIPLETKN+
Sbjct: 1294 RVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLMPPSRQHNNIPLETKNK 1347


>gb|ADD31159.1| RNA polymerase beta'' subunit protein [Rhododendron simsii]
          Length = 1374

 Score = 72.8 bits (177), Expect = 7e-11
 Identities = 38/65 (58%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
 Frame = -1

Query: 552  KTKRGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQN*T 379
            +T R + ++   G   W  G    VVLGGMIP+GTGFKGL+PP RQH NIPLETK QN  
Sbjct: 1300 ETARVLAKAALRGRIDWLKGLKENVVLGGMIPIGTGFKGLIPPLRQHNNIPLETKKQNRF 1359

Query: 378  K*EMK 364
            K EMK
Sbjct: 1360 KGEMK 1364



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 32/54 (59%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
 Frame = -2

Query: 707  RGIIQSGFNG*RGWNSGWM--VVLGGMIPVGTGFKGLVPPSRQHKNIPLETKNQ 552
            R + ++   G   W  G    VVLGGMIP+GTGFKGL+PP RQH NIPLETK Q
Sbjct: 1303 RVLAKAALRGRIDWLKGLKENVVLGGMIPIGTGFKGLIPPLRQHNNIPLETKKQ 1356