BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033072
         (620 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    74   2e-11
ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcript...    74   3e-11
gb|AAD26953.1| putative non-LTR retrolelement reverse transcript...    66   6e-09
gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    62   1e-07
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]               61   2e-07

>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 73.9 bits (180), Expect = 2e-11
 Identities = 48/203 (23%), Positives = 94/203 (46%), Gaps = 21/203 (10%)
 Frame = -1

Query: 602  HSSILNMKEDFRSAPLPSN--AQDQILW----AGSSQVKAALIWQSIHHSKPPFIWKNLV 441
            ++S+ N++    ++P PS    +D   W    + S+   + L W+ +       +W   V
Sbjct: 996  NASLANLRSTLLNSPAPSGDRGEDTYTWYIEGSSSTSFSSKLTWECLRQRDTTKLWAAAV 1055

Query: 440  WHKTYIPRFSFFLWLA------MHKRLLTWHMN---ICCLCEQSVESFHHXXXXXXXXXX 288
            W+K  IP+++F  W+A      +  R   W  N   +CC+C++  E+  H          
Sbjct: 1056 WYKGCIPKYAFNFWVAHLNRLPVRARTTHWSTNRPSLCCVCQRETETRDHLFIHCTLGSL 1115

Query: 287  XLCTVFAFHGWFGVPTERNQLLR----LIQFTRMYQMTFN--IIKLCLETMVYKIWNERN 126
                V A  G       R+Q+ R    +I++    Q +F+  + KL ++T ++ IW ERN
Sbjct: 1116 IWQQVLARFG-------RSQMFREWKDIIEWMLSNQGSFSGTLKKLAVQTAIFHIWKERN 1168

Query: 125  RRAHAEHSSTAAILAQECNRLVK 57
             R H+  S++   + ++ +R ++
Sbjct: 1169 SRLHSAMSASHTAIFKQIDRSIR 1191


>ref|NP_197389.1| RNA-directed DNA polymerase (reverse transcriptase)-related family
           protein [Arabidopsis thaliana]
           gi|332005241|gb|AED92624.1| RNA-directed DNA polymerase
           (reverse transcriptase)-related family protein
           [Arabidopsis thaliana]
          Length = 295

 Score = 73.6 bits (179), Expect = 3e-11
 Identities = 58/188 (30%), Positives = 82/188 (43%), Gaps = 19/188 (10%)
 Frame = -1

Query: 563 APLP--SNAQDQILW---AGS--SQVKAALIWQSIHHSKPPFIWKNLVWHKTYIPRFSFF 405
           AP+P  S  QD  LW   AGS      +   W+ I    P   W  +VW K YIPRFS  
Sbjct: 84  APVPHESRGQDSFLWRNAAGSYLPSFSSRDTWEQIRVHSPTVPWAKVVWFKEYIPRFSLI 143

Query: 404 LWLAMHKRLLT------WHMNI---CCLCEQSVESFHH---XXXXXXXXXXXLCTVFAFH 261
            W++  +RL T      W MNI     LC    E+  H                + F   
Sbjct: 144 TWMSFLERLPTRDRLRGWGMNIPSSWVLCSNGDETHAHLFFECSFSLAIWEFFASKFRPS 203

Query: 260 GWFGVPTERNQLLRLIQFTRMYQMTFNIIKLCLETMVYKIWNERNRRAHAEHSSTAAILA 81
             FG+P   + +L+L     +   +  I+KL L++ VY +W ERN R     SS+A+ L 
Sbjct: 204 PPFGLPAASSWILQL----PLRSHSTTILKLLLQSAVYHVWKERNARIFTSISSSASSLR 259

Query: 80  QECNRLVK 57
              +R ++
Sbjct: 260 LAIDRTMR 267


>gb|AAD26953.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 323

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 53/202 (26%), Positives = 80/202 (39%), Gaps = 14/202 (6%)
 Frame = -1

Query: 620 NPPLSTHSSILNMKEDFRSAPLPSNAQDQILW-----AGSSQVKAALIWQSIHHSKPPFI 456
           NP ++   S+L   E      +     D   W     A S+   A+  W +++       
Sbjct: 98  NPSIALLKSVLPSSESM----IECQHDDVYKWKPDHHAPSNIFSASKTWTALNPDGVLVP 153

Query: 455 WKNLVWHKTYIPRFSFFLWLAMHKRLLT------WHMNI---CCLCEQSVESFHHXXXXX 303
           W+  VW K  IP+ +F  W+A  KRL T      W +NI   C LC   V+  H      
Sbjct: 154 WQKSVWFKDRIPKHAFICWVAAWKRLHTRDRLTQWGLNIPTVCVLCNV-VDETHDHLFFQ 212

Query: 302 XXXXXXLCTVFAFHGWFGVPTERNQLLRLIQFTRMYQMTFNIIKLCLETMVYKIWNERNR 123
                 + + F        P     +L  ++     +    IIKL  +  VY IW ERN 
Sbjct: 213 CQFSNEIWSFFMIRAGMTPPHLFGPILLWLKSASSSKNLSLIIKLLFQASVYLIWRERNC 272

Query: 122 RAHAEHSSTAAILAQECNRLVK 57
           R H  HS T   + +E  +L++
Sbjct: 273 RIHTTHSRTPPTIIKEVQQLIR 294


>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 41/185 (22%), Positives = 71/185 (38%), Gaps = 23/185 (12%)
 Frame = -1

Query: 542 QDQILWAGSS-----QVKAALIWQSIHHSKPPFIWKNLVWHKTYIPRFSFFLWLAMHKRL 378
           +D +LW G              W      KP   W   +W     P++SF  WLA   RL
Sbjct: 241 EDVVLWKGKGGRFKPSFSTKETWADTREQKPRNEWYQGIWFSHATPKYSFITWLATKNRL 300

Query: 377 LT------WHMNI---CCLCEQSVESFHHXXXXXXXXXXXLCTVFAFHGWFGVP------ 243
            T      W+  +   C  C++  E+ +H               ++   W G+       
Sbjct: 301 STGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCR---------YSREVWSGLTSKLLTR 351

Query: 242 ---TERNQLLRLIQFTRMYQMTFNIIKLCLETMVYKIWNERNRRAHAEHSSTAAILAQEC 72
              T+   +L+L+    +      +++   + +VY IW ERN R H E    +A+L +  
Sbjct: 352 HYSTDWTTILKLLTDKTLGNNRLFLLRYAFQILVYSIWKERNSRRHGEEPLPSALLLKRL 411

Query: 71  NRLVK 57
           ++ V+
Sbjct: 412 DKEVR 416


>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
          Length = 1161

 Score = 60.8 bits (146), Expect = 2e-07
 Identities = 47/175 (26%), Positives = 67/175 (38%), Gaps = 14/175 (8%)
 Frame = -1

Query: 539  DQILW-----AGSSQVKAALIWQSIHHSKPPFIWKNLVWHKTYIPRFSFFLWLAMHKRLL 375
            D  LW     A S++   A  W  +  S    +W   VW K ++P+ +F  W+  H RL 
Sbjct: 953  DTYLWKIGHHAPSNRFSTADTWSYLQPSSTSVLWHKAVWFKDHVPKQAFICWVVAHNRLH 1012

Query: 374  T------WHMNI---CCLCEQSVESFHHXXXXXXXXXXXLCTVFAFHGWFGVPTERNQLL 222
            T      W  +I   C LC    ES  H                        P   + LL
Sbjct: 1013 TRDRLRRWGFSIPPTCVLCNDLDESREHLFFRCQFSSEIWSFFMRALNLNPPPQFMHCLL 1072

Query: 221  RLIQFTRMYQMTFNIIKLCLETMVYKIWNERNRRAHAEHSSTAAILAQECNRLVK 57
              +  +R   +T  I KL     VY IW ERN R H+     A ++ +E   +V+
Sbjct: 1073 WTLTASRDRNITL-ITKLLFHASVYFIWRERNLRIHSNSVRPAHLIIKEIQLIVR 1126