BLASTX nr result

ID: Panax21_contig00033027 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00033027
         (477 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38027.3| unnamed protein product [Vitis vinifera]              154   7e-36
ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257...   154   7e-36
ref|XP_002313773.1| predicted protein [Populus trichocarpa] gi|2...   141   6e-32
ref|NP_565513.1| RNA recognition motif-containing protein [Arabi...   127   1e-27
ref|XP_003590983.1| Eukaryotic translation initiation factor 3 s...   125   4e-27

>emb|CBI38027.3| unnamed protein product [Vitis vinifera]
          Length = 918

 Score =  154 bits (389), Expect = 7e-36
 Identities = 82/141 (58%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
 Frame = -3

Query: 475 IPQNFETGQSKGFAFVKYTCKQDAENAIKKFNGNSFGKRPIAVDWAVPKKIYATGAQPAT 296
           IPQN ETG S+GFAFVK+T KQDAENAI+KFNG   GKRPIAVDWAVPKKIY TGA P  
Sbjct: 294 IPQNSETGLSRGFAFVKFTSKQDAENAIQKFNGEKIGKRPIAVDWAVPKKIYITGANPVV 353

Query: 295 ASEDGQ-NGSXXXXXXXXXXXXXXXXXXXXXITEPNRADVVPDNSYSTEIEGIPTEVDFE 119
           ASEDGQ NG                      +  P      PD+S +TE E +PTE DF 
Sbjct: 354 ASEDGQLNGRDGEGDTDSDDLEDDTTDIDNKVPHPQGVGSAPDDSNTTEKEVMPTEFDFN 413

Query: 118 EEADVARKVLNNLISLTSKGT 56
           EEAD+ARKVL NLI+ ++KGT
Sbjct: 414 EEADIARKVLKNLITSSAKGT 434


>ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257200 [Vitis vinifera]
          Length = 972

 Score =  154 bits (389), Expect = 7e-36
 Identities = 82/141 (58%), Positives = 93/141 (65%), Gaps = 1/141 (0%)
 Frame = -3

Query: 475 IPQNFETGQSKGFAFVKYTCKQDAENAIKKFNGNSFGKRPIAVDWAVPKKIYATGAQPAT 296
           IPQN ETG S+GFAFVK+T KQDAENAI+KFNG   GKRPIAVDWAVPKKIY TGA P  
Sbjct: 313 IPQNSETGLSRGFAFVKFTSKQDAENAIQKFNGEKIGKRPIAVDWAVPKKIYITGANPVV 372

Query: 295 ASEDGQ-NGSXXXXXXXXXXXXXXXXXXXXXITEPNRADVVPDNSYSTEIEGIPTEVDFE 119
           ASEDGQ NG                      +  P      PD+S +TE E +PTE DF 
Sbjct: 373 ASEDGQLNGRDGEGDTDSDDLEDDTTDIDNKVPHPQGVGSAPDDSNTTEKEVMPTEFDFN 432

Query: 118 EEADVARKVLNNLISLTSKGT 56
           EEAD+ARKVL NLI+ ++KGT
Sbjct: 433 EEADIARKVLKNLITSSAKGT 453


>ref|XP_002313773.1| predicted protein [Populus trichocarpa] gi|222850181|gb|EEE87728.1|
           predicted protein [Populus trichocarpa]
          Length = 974

 Score =  141 bits (355), Expect = 6e-32
 Identities = 82/157 (52%), Positives = 97/157 (61%), Gaps = 8/157 (5%)
 Frame = -3

Query: 475 IPQNFETGQSKGFAFVKYTCKQDAENAIKKFNGNSFGKRPIAVDWAVPKKIYATGAQPAT 296
           +P N ETG SKGFAFVK+TCKQDAENAI+KFNG  FGKRPIAVDWAVPKKIY++GA  + 
Sbjct: 311 VPHNSETGLSKGFAFVKFTCKQDAENAIQKFNGQKFGKRPIAVDWAVPKKIYSSGANVSA 370

Query: 295 ASEDG------QNGSXXXXXXXXXXXXXXXXXXXXXITEPNRADVV--PDNSYSTEIEGI 140
           ASEDG      QN                         + +   VV  PD+  S E E +
Sbjct: 371 ASEDGNASAGHQNEKDSSCEDSDYDDEDDNDTDVIGKKQQHDGVVVTSPDSDLS-EKEDM 429

Query: 139 PTEVDFEEEADVARKVLNNLISLTSKGTPISPEDKST 29
           PTEVDFE+EAD+ARKVL NLI+ +S   P   E+  T
Sbjct: 430 PTEVDFEQEADIARKVLRNLIASSSDVLPKGIEELET 466


>ref|NP_565513.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|4567275|gb|AAD23688.1| expressed protein [Arabidopsis
           thaliana] gi|16604631|gb|AAL24108.1| unknown protein
           [Arabidopsis thaliana] gi|27754736|gb|AAO22811.1|
           unknown protein [Arabidopsis thaliana]
           gi|330252084|gb|AEC07178.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 1003

 Score =  127 bits (318), Expect = 1e-27
 Identities = 76/161 (47%), Positives = 96/161 (59%), Gaps = 6/161 (3%)
 Frame = -3

Query: 475 IPQNFETGQSKGFAFVKYTCKQDAENAIKKFNGNSFGKRPIAVDWAVPKKIYATGAQPAT 296
           IP+NFETG  KGFAFVK+TCK+DA NAIKKFNG+ FGKRPIAVDWAVPK IY   A   T
Sbjct: 362 IPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATT 421

Query: 295 ASEDG-QNGSXXXXXXXXXXXXXXXXXXXXXITEPNRADVVPDNSYS-TEIEG----IPT 134
           AS DG + GS                         +  D   D S   TE +     + T
Sbjct: 422 ASADGDKEGSDGDSENSSVDLEEVDEAVESHPPPGDDTDDDEDGSNKLTESDALDKDVGT 481

Query: 133 EVDFEEEADVARKVLNNLISLTSKGTPISPEDKSTAAKSEK 11
           +++FE+EADVARKVL NL++ +SKG+  +PE ++  +   K
Sbjct: 482 DMNFEDEADVARKVLKNLLA-SSKGSTATPEGETEESDKSK 521


>ref|XP_003590983.1| Eukaryotic translation initiation factor 3 subunit G [Medicago
           truncatula] gi|355480031|gb|AES61234.1| Eukaryotic
           translation initiation factor 3 subunit G [Medicago
           truncatula]
          Length = 962

 Score =  125 bits (314), Expect = 4e-27
 Identities = 68/155 (43%), Positives = 95/155 (61%), Gaps = 1/155 (0%)
 Frame = -3

Query: 475 IPQNFETGQSKGFAFVKYTCKQDAENAIKKFNGNSFGKRPIAVDWAVPKKIYATGAQPAT 296
           IPQ  +TG SKGFAFVK+TCKQDAENAI+K NG+ FG R IAVDWAVPKKI+++    A 
Sbjct: 313 IPQKSDTGLSKGFAFVKFTCKQDAENAIRKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAP 372

Query: 295 ASEDGQNGSXXXXXXXXXXXXXXXXXXXXXITEPNRADVVPDNSYSTEI-EGIPTEVDFE 119
           ASE+GQ                             ++D   D+   + + E +P+E DF+
Sbjct: 373 ASEEGQQ--------KVTDEDGSTTTEDDLENTDKKSDQGDDSDIDSVVEEDVPSEDDFD 424

Query: 118 EEADVARKVLNNLISLTSKGTPISPEDKSTAAKSE 14
           +EAD+ARKVLNNLI+ ++K   ++ +  S+  K++
Sbjct: 425 KEADIARKVLNNLITSSAKDESVNNDSVSSEEKNK 459


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