BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032988
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      136   2e-30
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      127   7e-28
ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-...   127   1e-27
gb|AEO45243.1| sigma factor [Nicotiana tabacum]                       126   2e-27
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-...   124   6e-27

>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  136 bits (343), Expect = 2e-30
 Identities = 76/128 (59%), Positives = 96/128 (75%), Gaps = 6/128 (4%)
 Frame = +3

Query: 3   SVDALLLLQKSILEKQWNLSTEETLICTTSREKT---VQVTGSGISARRRRIDNRKRVAN 173
           SV+ LLLLQKS+LEKQWNLS E+TL  +   EK    + +T SG SARRRR+D+R+RV +
Sbjct: 107 SVEVLLLLQKSMLEKQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLD 166

Query: 174 RRSSHIQL---KQQISIISPKLRHDHLKGYVKGVISEQLLTHAEVVQLSKKIKTGLQIDD 344
           R SS       K   SII P+L  + LKGYVKGV+SE+LLTHAEV+QLSKKI+ GL +++
Sbjct: 167 RHSSATPTSAAKPLRSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEE 226

Query: 345 RKSRLKER 368
           +KSRLKER
Sbjct: 227 QKSRLKER 234


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  127 bits (320), Expect = 7e-28
 Identities = 68/125 (54%), Positives = 90/125 (72%), Gaps = 3/125 (2%)
 Frame = +3

Query: 3   SVDALLLLQKSILEKQWNLSTEETLICTTSREKTVQVTGSGISARRRRIDNRKR---VAN 173
           SV+ LLLLQKS+LEKQWNLS E+ +    + +K +Q+T SG SARRRR+D RKR     N
Sbjct: 104 SVEVLLLLQKSMLEKQWNLSAEKAMTNENNCKKKMQITCSGTSARRRRMDTRKRDLLPKN 163

Query: 174 RRSSHIQLKQQISIISPKLRHDHLKGYVKGVISEQLLTHAEVVQLSKKIKTGLQIDDRKS 353
             +S    K+  S+I P+L  +  KGY+ GV+ ++LLTH EVVQLSKKIK GL ++++KS
Sbjct: 164 SATSDSSSKRLRSVIGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKS 223

Query: 354 RLKER 368
           RLKER
Sbjct: 224 RLKER 228


>ref|XP_004151855.1| PREDICTED: RNA polymerase sigma factor sigA-like [Cucumis sativus]
           gi|449514942|ref|XP_004164521.1| PREDICTED: RNA
           polymerase sigma factor sigA-like [Cucumis sativus]
          Length = 508

 Score =  127 bits (318), Expect = 1e-27
 Identities = 69/128 (53%), Positives = 98/128 (76%), Gaps = 6/128 (4%)
 Frame = +3

Query: 3   SVDALLLLQKSILEKQWNLSTEETLICTTSREKT---VQVTGSGISARRRRIDNRKRVAN 173
           +V+ALLLLQKS+LEKQW+LS E+T+   T +EKT   V VT SG+SAR+RR+ +++++ +
Sbjct: 107 TVEALLLLQKSMLEKQWSLSFEQTVSTDTPKEKTLKKVPVTCSGVSARQRRMSSKRKIQS 166

Query: 174 RRSSHIQ---LKQQISIISPKLRHDHLKGYVKGVISEQLLTHAEVVQLSKKIKTGLQIDD 344
           +     Q    KQ    ISP+L  + LKGYVKG++SE+LL+HAEVV+LSKKIK GL +++
Sbjct: 167 KHVFMAQPKISKQLRPTISPELLQNRLKGYVKGLLSEELLSHAEVVRLSKKIKVGLTLEE 226

Query: 345 RKSRLKER 368
           RK+RLK+R
Sbjct: 227 RKTRLKQR 234


>gb|AEO45243.1| sigma factor [Nicotiana tabacum]
          Length = 264

 Score =  126 bits (316), Expect = 2e-27
 Identities = 68/125 (54%), Positives = 89/125 (71%), Gaps = 3/125 (2%)
 Frame = +3

Query: 3   SVDALLLLQKSILEKQWNLSTEETLICTTSREKTVQVTGSGISARRRRIDNRKR---VAN 173
           SV+ LLLLQKS+LEKQWNLS E+ +    + +K +Q T SG SARRRR+D RKR     N
Sbjct: 104 SVEVLLLLQKSMLEKQWNLSAEKAMTNENNCKKKMQTTCSGTSARRRRMDTRKRDLLPKN 163

Query: 174 RRSSHIQLKQQISIISPKLRHDHLKGYVKGVISEQLLTHAEVVQLSKKIKTGLQIDDRKS 353
             +S    K+  S+I P+L  +  KGY+ GV+ ++LLTH EVVQLSKKIK GL ++++KS
Sbjct: 164 SATSDSSNKRLRSVIGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKS 223

Query: 354 RLKER 368
           RLKER
Sbjct: 224 RLKER 228


>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 503

 Score =  124 bits (312), Expect = 6e-27
 Identities = 68/126 (53%), Positives = 93/126 (73%), Gaps = 4/126 (3%)
 Frame = +3

Query: 3   SVDALLLLQKSILEKQWNLSTEETLICTTSRE----KTVQVTGSGISARRRRIDNRKRVA 170
           SV+ALLLLQKS+LEKQWNLS E  ++   S +    K V VT SG+SAR+RR++ +++ A
Sbjct: 107 SVEALLLLQKSMLEKQWNLSFEREVLTEHSSKGKKCKKVAVTCSGVSARQRRMNTKRKTA 166

Query: 171 NRRSSHIQLKQQISIISPKLRHDHLKGYVKGVISEQLLTHAEVVQLSKKIKTGLQIDDRK 350
            +    +QLK +IS   P+L    LKGYVKG++SE+LL+HAEVV LS++IK GL +++ K
Sbjct: 167 IKTCGAMQLKSKIS---PELLQHRLKGYVKGIVSEELLSHAEVVNLSERIKVGLSLEEHK 223

Query: 351 SRLKER 368
           SRLKER
Sbjct: 224 SRLKER 229