BLASTX nr result

ID: Panax21_contig00032982 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032982
         (616 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631274.1| PREDICTED: pentatricopeptide repeat-containi...   291   6e-77
emb|CBI28554.3| unnamed protein product [Vitis vinifera]              291   8e-77
emb|CAN65318.1| hypothetical protein VITISV_006411 [Vitis vinifera]   288   5e-76
ref|XP_002328586.1| predicted protein [Populus trichocarpa] gi|2...   263   2e-68
ref|XP_004161088.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   261   5e-68

>ref|XP_003631274.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
            chloroplastic-like [Vitis vinifera]
          Length = 667

 Score =  291 bits (745), Expect = 6e-77
 Identities = 137/200 (68%), Positives = 171/200 (85%)
 Frame = -2

Query: 612  GHVKLSHQIFEKLPSVNVICFTSIINAYAKNGMGMKGLEMLKEMIQKGLEPDKVTFLCVL 433
            GHV+LSHQIFE+L S N ICFTSIIN YA+NGMG +GLEML+ M ++GL+PD+VTFLC L
Sbjct: 467  GHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGLEMLEIMAKQGLKPDRVTFLCAL 526

Query: 432  NGCNHSGLVEEGKMVFDSMTTLHGMNPDRKHYSCMVDLFGRAGLLEDAEELLKQAPNKDD 253
             GC+HSGLVEEG+ VF+SM ++HG++PD++HYSCMVDL GRAGLL++AE LLK AP K D
Sbjct: 527  TGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRAGLLDEAEGLLKHAPAKSD 586

Query: 252  SVLWSSLLRSCRIYGNESVGRRVAKKLMDLEPEDPEVWLQASNFYSEIGEFETSMQIREV 73
            SV+WSSLL+SCRI+G+  VGRR AK LM+LEPEDP  +LQAS+FYSEIGE E SMQIRE+
Sbjct: 587  SVMWSSLLQSCRIHGDTIVGRRAAKVLMELEPEDPATYLQASSFYSEIGELEISMQIREI 646

Query: 72   AVARKMRMDIGNCLIEARDH 13
            A+AR+M+ ++G+ LIE   H
Sbjct: 647  AIARRMKREMGHSLIEVNSH 666


>emb|CBI28554.3| unnamed protein product [Vitis vinifera]
          Length = 1125

 Score =  291 bits (744), Expect = 8e-77
 Identities = 137/200 (68%), Positives = 171/200 (85%)
 Frame = -2

Query: 612  GHVKLSHQIFEKLPSVNVICFTSIINAYAKNGMGMKGLEMLKEMIQKGLEPDKVTFLCVL 433
            GHV+LSHQIFE+L S N ICFTSIIN YA+NGMG +GLEML+ M ++GL+PD+VTFLC L
Sbjct: 467  GHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGLEMLEIMAKQGLKPDRVTFLCAL 526

Query: 432  NGCNHSGLVEEGKMVFDSMTTLHGMNPDRKHYSCMVDLFGRAGLLEDAEELLKQAPNKDD 253
             GC+HSGLVEEG+ VF+SM ++HG++PD++HYSCMVDL GRAGLL++AE LLK AP K D
Sbjct: 527  TGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRAGLLDEAEGLLKHAPAKSD 586

Query: 252  SVLWSSLLRSCRIYGNESVGRRVAKKLMDLEPEDPEVWLQASNFYSEIGEFETSMQIREV 73
            SV+WSSLL+SCRI+G+  VGRR AK LM+LEPEDP  +LQAS+FYSEIGE E SMQIRE+
Sbjct: 587  SVMWSSLLQSCRIHGDTIVGRRAAKVLMELEPEDPATYLQASSFYSEIGELEISMQIREI 646

Query: 72   AVARKMRMDIGNCLIEARDH 13
            A+AR+M+ ++G+ LIE   H
Sbjct: 647  AIARRMKREMGHSLIEVNTH 666


>emb|CAN65318.1| hypothetical protein VITISV_006411 [Vitis vinifera]
          Length = 1052

 Score =  288 bits (737), Expect = 5e-76
 Identities = 136/200 (68%), Positives = 170/200 (85%)
 Frame = -2

Query: 612  GHVKLSHQIFEKLPSVNVICFTSIINAYAKNGMGMKGLEMLKEMIQKGLEPDKVTFLCVL 433
            GHV+LSHQIFE+L S N ICFTSIIN YA+NGMG +GLEML+ M ++GL+PD+VTFLC L
Sbjct: 456  GHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGLEMLEIMAKQGLKPDRVTFLCAL 515

Query: 432  NGCNHSGLVEEGKMVFDSMTTLHGMNPDRKHYSCMVDLFGRAGLLEDAEELLKQAPNKDD 253
             GC+HSGLVEEG+ VF+SM ++HG++PD++HYSCMVDL GRAGLL++AE LLK AP K D
Sbjct: 516  TGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRAGLLDEAEGLLKHAPAKSD 575

Query: 252  SVLWSSLLRSCRIYGNESVGRRVAKKLMDLEPEDPEVWLQASNFYSEIGEFETSMQIREV 73
            SV+WSSLL+SCRI+G+  VGRR AK LM+LE EDP  +LQAS+FYSEIGE E SMQIRE+
Sbjct: 576  SVMWSSLLQSCRIHGDTIVGRRAAKVLMELEXEDPATYLQASSFYSEIGELEISMQIREI 635

Query: 72   AVARKMRMDIGNCLIEARDH 13
            A+AR+M+ ++G+ LIE   H
Sbjct: 636  AIARRMKREMGHSLIEVNSH 655


>ref|XP_002328586.1| predicted protein [Populus trichocarpa] gi|222838568|gb|EEE76933.1|
            predicted protein [Populus trichocarpa]
          Length = 699

 Score =  263 bits (671), Expect = 2e-68
 Identities = 123/199 (61%), Positives = 162/199 (81%)
 Frame = -2

Query: 612  GHVKLSHQIFEKLPSVNVICFTSIINAYAKNGMGMKGLEMLKEMIQKGLEPDKVTFLCVL 433
            GHV+LS ++FE+LPS NVICFTSIIN  A+NG+G + L+  + MI+KGLEPDKVTFLCVL
Sbjct: 481  GHVQLSKKVFEQLPSPNVICFTSIINGLAQNGLGRECLQTFEAMIRKGLEPDKVTFLCVL 540

Query: 432  NGCNHSGLVEEGKMVFDSMTTLHGMNPDRKHYSCMVDLFGRAGLLEDAEELLKQAPNKDD 253
             GC+HSGL EEG+++F SM   +G+ P ++H+SCMVD+ GRAGLL++AEEL ++AP + D
Sbjct: 541  TGCSHSGLFEEGRLIFYSMKAQYGICPAKEHFSCMVDILGRAGLLDEAEELTQKAPGRGD 600

Query: 252  SVLWSSLLRSCRIYGNESVGRRVAKKLMDLEPEDPEVWLQASNFYSEIGEFETSMQIREV 73
             V+W+SLLRSCRIY NE VGRR AK L++L+PED  V+LQ SNFYS+IGE+E+SM IRE+
Sbjct: 601  CVMWTSLLRSCRIYRNEIVGRRAAKALLELDPEDFSVYLQVSNFYSDIGEYESSMHIREL 660

Query: 72   AVARKMRMDIGNCLIEARD 16
            A+ARK+  +IG   IE  +
Sbjct: 661  AIARKLTREIGRSFIEVNN 679


>ref|XP_004161088.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g13600-like [Cucumis sativus]
          Length = 618

 Score =  261 bits (668), Expect = 5e-68
 Identities = 119/186 (63%), Positives = 159/186 (85%)
 Frame = -2

Query: 612 GHVKLSHQIFEKLPSVNVICFTSIINAYAKNGMGMKGLEMLKEMIQKGLEPDKVTFLCVL 433
           GHV+LS ++FE++ S  VICFTSIIN YA+NG+G +G+E+LK MIQ+GL+PDKVTFLC L
Sbjct: 308 GHVELSWKVFEEIYSPGVICFTSIINGYARNGLGKEGVEILKMMIQRGLKPDKVTFLCAL 367

Query: 432 NGCNHSGLVEEGKMVFDSMTTLHGMNPDRKHYSCMVDLFGRAGLLEDAEELLKQAPNKDD 253
            GCNHSGLVEEG+ VF+ M TL+G+ PD KHYSCMVDL GRAGLL++AE+L+++ P K +
Sbjct: 368 IGCNHSGLVEEGRFVFELMKTLYGIEPDWKHYSCMVDLLGRAGLLDEAEKLIQKVPEKVN 427

Query: 252 SVLWSSLLRSCRIYGNESVGRRVAKKLMDLEPEDPEVWLQASNFYSEIGEFETSMQIREV 73
            V+WSS+LRSCR++ NE++GR++ K L+DLE EDP + LQASNFYS+IG+FETS Q+RE+
Sbjct: 428 GVIWSSMLRSCRVHRNETIGRKIVKWLVDLEAEDPAILLQASNFYSDIGDFETSKQLREI 487

Query: 72  AVARKM 55
           A+ +K+
Sbjct: 488 ALTKKV 493


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