BLASTX nr result

ID: Panax21_contig00032967 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032967
         (506 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002326066.1| predicted protein [Populus trichocarpa] gi|2...    85   8e-17
ref|XP_002266157.1| PREDICTED: ATP-dependent RNA helicase DBP2 [...    87   1e-16
ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putativ...    83   4e-16
ref|XP_002319430.1| predicted protein [Populus trichocarpa] gi|2...    79   2e-14
gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]          65   2e-11

>ref|XP_002326066.1| predicted protein [Populus trichocarpa] gi|222862941|gb|EEF00448.1|
           predicted protein [Populus trichocarpa]
          Length = 530

 Score = 85.1 bits (209), Expect(2) = 8e-17
 Identities = 46/83 (55%), Positives = 55/83 (66%)
 Frame = -2

Query: 307 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSMGQMSINVED 128
           FLVAQI+KAI+DV+SGNTVAFATGK                  ALSK   MG   IN+ED
Sbjct: 450 FLVAQIKKAIADVESGNTVAFATGKAARRKEREAAASQKEARNALSKV--MGSTCINIED 507

Query: 127 KYKYMIAPTMAKKEGSADDAWDD 59
           KY++MIAP++   EG+AD AWDD
Sbjct: 508 KYRFMIAPSVITSEGAADSAWDD 530



 Score = 26.6 bits (57), Expect(2) = 8e-17
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -1

Query: 506 DYVHRIXXXXXXXXXXXXXSFYTDRDM 426
           DYVHRI             SFYTDRD+
Sbjct: 423 DYVHRIGRTGRAGSTGQATSFYTDRDL 449


>ref|XP_002266157.1| PREDICTED: ATP-dependent RNA helicase DBP2 [Vitis vinifera]
           gi|297745752|emb|CBI15808.3| unnamed protein product
           [Vitis vinifera]
          Length = 568

 Score = 86.7 bits (213), Expect(2) = 1e-16
 Identities = 45/83 (54%), Positives = 55/83 (66%)
 Frame = -2

Query: 307 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSMGQMSINVED 128
           FLVA IRKAI+DV SGNTVAFATGKV                 ALS    MG  S+N+E+
Sbjct: 486 FLVAHIRKAIADVGSGNTVAFATGKVARKKEREAAAAQKEARIALSNLSLMGPTSLNIEE 545

Query: 127 KYKYMIAPTMAKKEGSADDAWDD 59
           KY++M++P+  K EG+ADDAWDD
Sbjct: 546 KYRFMMSPSSIKTEGAADDAWDD 568



 Score = 24.3 bits (51), Expect(2) = 1e-16
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 506 DYVHRIXXXXXXXXXXXXXSFYTDRDM 426
           +YVHRI             SFYTDRD+
Sbjct: 459 NYVHRIGRTGRAGSTGQATSFYTDRDV 485


>ref|XP_002523955.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
           gi|223536802|gb|EEF38442.1| dead box ATP-dependent RNA
           helicase, putative [Ricinus communis]
          Length = 564

 Score = 83.2 bits (204), Expect(2) = 4e-16
 Identities = 46/83 (55%), Positives = 54/83 (65%)
 Frame = -2

Query: 307 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSMGQMSINVED 128
           FLVAQI+KAI+DV+SGNTVAFATGKV                  LSK   +G  SIN+ED
Sbjct: 484 FLVAQIKKAIADVKSGNTVAFATGKVARRKEREAAASQKEARNDLSK--LLGPTSINIED 541

Query: 127 KYKYMIAPTMAKKEGSADDAWDD 59
           KY++MIA +  K EG AD AWDD
Sbjct: 542 KYRFMIASSNTKGEGVADSAWDD 564



 Score = 26.2 bits (56), Expect(2) = 4e-16
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 506 DYVHRIXXXXXXXXXXXXXSFYTDRDM 426
           DYVHR+             SFYTDRD+
Sbjct: 457 DYVHRVGRTGRAGSAGQATSFYTDRDL 483


>ref|XP_002319430.1| predicted protein [Populus trichocarpa] gi|222857806|gb|EEE95353.1|
           predicted protein [Populus trichocarpa]
          Length = 559

 Score = 78.6 bits (192), Expect(2) = 2e-14
 Identities = 43/85 (50%), Positives = 53/85 (62%), Gaps = 2/85 (2%)
 Frame = -2

Query: 307 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSM--GQMSINV 134
           FLVAQI+KAI+DV+SGNTVAFATGK                       PS   G   IN+
Sbjct: 478 FLVAQIKKAIADVESGNTVAFATGKTARRKEREAAAALHKEAR---NDPSKVTGPACINI 534

Query: 133 EDKYKYMIAPTMAKKEGSADDAWDD 59
           EDKY++M+AP++ K EG+AD AWDD
Sbjct: 535 EDKYRFMMAPSIIKSEGAADSAWDD 559



 Score = 25.0 bits (53), Expect(2) = 2e-14
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -1

Query: 506 DYVHRIXXXXXXXXXXXXXSFYTDRDM 426
           DYVHRI             SFYTD+D+
Sbjct: 451 DYVHRIGRTGRAGSTGQATSFYTDQDL 477


>gb|AAF75791.1|AF271892_1 DEAD box protein P68 [Pisum sativum]
          Length = 622

 Score = 65.1 bits (157), Expect(2) = 2e-11
 Identities = 35/76 (46%), Positives = 46/76 (60%)
 Frame = -2

Query: 307 FLVAQIRKAISDVQSGNTVAFATGKVXXXXXXXXXXXXXXXXXALSKQPSMGQMSINVED 128
           FLV  IRKAI+D +SGN VAFATGKV                 A S+   +G  SIN+ED
Sbjct: 481 FLVTNIRKAIADAESGNAVAFATGKVARRKEKEAAAAHKEANIASSRHLGLGAASINIED 540

Query: 127 KYKYMIAPTMAKKEGS 80
           KY++MIA + ++ EG+
Sbjct: 541 KYRFMIAASNSRGEGA 556



 Score = 28.5 bits (62), Expect(2) = 2e-11
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 506 DYVHRIXXXXXXXXXXXXXSFYTDRDMVFYT 414
           DY+HRI             SFYTDRDM   T
Sbjct: 454 DYIHRIGRTGRAGSTGIATSFYTDRDMFLVT 484


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