BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032909
         (547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                      43   1e-11
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...    42   1e-11
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...    42   1e-11
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]          43   2e-11
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    41   2e-10

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 42.7 bits (99), Expect(3) = 1e-11
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +2

Query: 359 GSCPRNGCISTKKVTSKFEPKNL*ELWTGRIPNLKYVKIRGCTTYVKRFQ 508
           G       ++  +V SK   K   E+WTG+ P+L ++KI GC  YVKR Q
Sbjct: 626 GYALETAALTLNRVPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQ 675



 Score = 36.2 bits (82), Expect(3) = 1e-11
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +3

Query: 93  VYLMKYKYELFERFKEFRSETN---WQSIRIL*SDQGRNTCAMSF 218
           +YLM++K E FE+FKEF++E      ++I+ L SD+G    +  F
Sbjct: 531 IYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEF 575



 Score = 35.0 bits (79), Expect(3) = 1e-11
 Identities = 19/32 (59%), Positives = 22/32 (68%)
 Frame = +1

Query: 235 VFSQWTPSDT**LIDVSERKNRTLLDMVRSIM 330
           +  Q TP  T     VSER+NRTLLDMVRS+M
Sbjct: 584 IVPQLTPPGTPQWNGVSERRNRTLLDMVRSMM 615


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score = 42.4 bits (98), Expect(3) = 1e-11
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +2

Query: 386 STKKVTSKFEPKNL*ELWTGRIPNLKYVKIRGCTTYVKRFQ 508
           +  +V SK   K   E+WTG+ P+L ++KI GC  YVKR Q
Sbjct: 184 TVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQ 224



 Score = 35.8 bits (81), Expect(3) = 1e-11
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +1

Query: 235 VFSQWTPSDT**LIDVSERKNRTLLDMVRSIM 330
           +  Q TP  T  L  VS+R+NRTLLDMVRS+M
Sbjct: 133 IVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMM 164



 Score = 35.4 bits (80), Expect(3) = 1e-11
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +3

Query: 93  VYLMKYKYELFERFKEFRSETN---WQSIRIL*SDQGRNTCAMSF 218
           VYLM++K E FE+FKEF +E      ++I+ L SD+G    ++ F
Sbjct: 80  VYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSLEF 124


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 655

 Score = 42.4 bits (98), Expect(3) = 1e-11
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = +2

Query: 386 STKKVTSKFEPKNL*ELWTGRIPNLKYVKIRGCTTYVKRFQ 508
           +  +V SK   K   E+WTG+ P+L ++KI GC  YVKR Q
Sbjct: 184 TVNRVPSKSMDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQ 224



 Score = 35.8 bits (81), Expect(3) = 1e-11
 Identities = 19/32 (59%), Positives = 23/32 (71%)
 Frame = +1

Query: 235 VFSQWTPSDT**LIDVSERKNRTLLDMVRSIM 330
           +  Q TP  T  L  VS+R+NRTLLDMVRS+M
Sbjct: 133 IVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMM 164



 Score = 35.4 bits (80), Expect(3) = 1e-11
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +3

Query: 93  VYLMKYKYELFERFKEFRSETN---WQSIRIL*SDQGRNTCAMSF 218
           VYLM++K E FE+FKEF +E      ++I+ L SD+G    ++ F
Sbjct: 80  VYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSLEF 124


>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
          Length = 873

 Score = 42.7 bits (99), Expect(3) = 2e-11
 Identities = 20/50 (40%), Positives = 27/50 (54%)
 Frame = +2

Query: 359 GSCPRNGCISTKKVTSKFEPKNL*ELWTGRIPNLKYVKIRGCTTYVKRFQ 508
           G        +  +V SK   K   E+WTG+ P+L ++KI GC  YVKR Q
Sbjct: 420 GYALETAAFTLNRVPSKSVDKTSYEIWTGKRPSLSFLKIWGCEVYVKRLQ 469



 Score = 37.0 bits (84), Expect(3) = 2e-11
 Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
 Frame = +3

Query: 93  VYLMKYKYELFERFKEFRSETN---WQSIRIL*SDQGRNTCAMSF 218
           VYLM++K E FE+FKEF++E      ++I+ L SD+G    ++ F
Sbjct: 325 VYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEF 369



 Score = 33.1 bits (74), Expect(3) = 2e-11
 Identities = 18/32 (56%), Positives = 22/32 (68%)
 Frame = +1

Query: 235 VFSQWTPSDT**LIDVSERKNRTLLDMVRSIM 330
           +  Q TP  T     VSER+NRTLLDMV+S+M
Sbjct: 378 IVPQLTPPGTPQWNRVSERRNRTLLDMVQSMM 409


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 41.2 bits (95), Expect(3) = 2e-10
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +2

Query: 398 VTSKFEPKNL*ELWTGRIPNLKYVKIRGCTTYVKRFQ 508
           V SK   K   E+WTG+ P+L ++KI GC  YVKR Q
Sbjct: 615 VPSKSVDKTPYEIWTGKRPSLSFLKIWGCEVYVKRLQ 651



 Score = 36.6 bits (83), Expect(3) = 2e-10
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 3/45 (6%)
 Frame = +3

Query: 93  VYLMKYKYELFERFKEFRSETN---WQSIRIL*SDQGRNTCAMSF 218
           VYLM++K E FE+FKEF +E      ++I+ L SD+G    ++ F
Sbjct: 507 VYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEF 551



 Score = 32.0 bits (71), Expect(3) = 2e-10
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 235 VFSQWTPSDT**LIDVSERKNRTLLDMVRSIM 330
           +  Q TP  T     VSE +NRTLLDMVRS+M
Sbjct: 560 IVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMM 591