BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032789
         (588 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              175   4e-42
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   175   4e-42
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   169   2e-40
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...   169   3e-40
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   168   7e-40

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  175 bits (444), Expect = 4e-42
 Identities = 112/195 (57%), Positives = 124/195 (63%), Gaps = 19/195 (9%)
 Frame = -3

Query: 583 REPNDSSTKVWLEKMRTLF--------SLWVFLS*YYG**SI*RVG*NWFAF*NSSK--- 437
           +EPN+SSTK WLEKMRTLF        S  V     Y      RV      F  + +   
Sbjct: 357 KEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK-----RVNEIGLPFEIAQRITF 411

Query: 436 ----NYF*GESESTICEQKLCLTYRDGSSTYSLWEGSKGHTFLRPGQVVHRRIMDGDIVF 269
               N    +    + ++KLCLTYRDG STYSL EGSKGHTFLRPGQVVHRRIMDGDIVF
Sbjct: 412 EERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVF 471

Query: 268 INRPPATHKCSL--LSIIGI**RC--INPLICAPLSADFDGDAIHLFYP*SRPAKAEVWK 101
           INRPP THK SL  LS+         INPLIC PLSADFDGD +HLFYP S  AKAEV +
Sbjct: 472 INRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLE 531

Query: 100 LFSVVGKQLFSSHNG 56
           LFS V KQL SSH+G
Sbjct: 532 LFS-VEKQLLSSHSG 545


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  175 bits (444), Expect = 4e-42
 Identities = 112/195 (57%), Positives = 124/195 (63%), Gaps = 19/195 (9%)
 Frame = -3

Query: 583 REPNDSSTKVWLEKMRTLF--------SLWVFLS*YYG**SI*RVG*NWFAF*NSSK--- 437
           +EPN+SSTK WLEKMRTLF        S  V     Y      RV      F  + +   
Sbjct: 297 KEPNESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK-----RVNEIGLPFEIAQRITF 351

Query: 436 ----NYF*GESESTICEQKLCLTYRDGSSTYSLWEGSKGHTFLRPGQVVHRRIMDGDIVF 269
               N    +    + ++KLCLTYRDG STYSL EGSKGHTFLRPGQVVHRRIMDGDIVF
Sbjct: 352 EERVNVHNMKHLQNLVDEKLCLTYRDGLSTYSLREGSKGHTFLRPGQVVHRRIMDGDIVF 411

Query: 268 INRPPATHKCSL--LSIIGI**RC--INPLICAPLSADFDGDAIHLFYP*SRPAKAEVWK 101
           INRPP THK SL  LS+         INPLIC PLSADFDGD +HLFYP S  AKAEV +
Sbjct: 412 INRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLGAKAEVLE 471

Query: 100 LFSVVGKQLFSSHNG 56
           LFS V KQL SSH+G
Sbjct: 472 LFS-VEKQLLSSHSG 485


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  169 bits (429), Expect = 2e-40
 Identities = 110/197 (55%), Positives = 126/197 (63%), Gaps = 20/197 (10%)
 Frame = -3

Query: 586 KREPNDSSTKVWLEKMRTLF--------SLWVFLS*YYG**SI*RVG*NWFAF*NSSKNY 431
           K+E ++S+TK WLEKMRTLF        S  V     Y    + +VG  +      ++  
Sbjct: 298 KKESSESTTKAWLEKMRTLFIRKGSGFSSRSVITGDAYT--LVNQVGIPY----EIAQRI 351

Query: 430 F*GESEST--------ICEQKLCLTYRDGSSTYSLWEGSKGHTFLRPGQVVHRRIMDGDI 275
              E  S         + + KLCLTY+DGSSTYSL EGSKGHTFLRPGQVVHRRIMDGDI
Sbjct: 352 TFEERVSVHNMRYLQELVDNKLCLTYKDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDI 411

Query: 274 VFINRPPATHKCSL--LSIIGI**RC--INPLICAPLSADFDGDAIHLFYP*SRPAKAEV 107
           VFINRPP THK SL  LS+         INPLIC PLSADFDGD +HLFYP S  AKAEV
Sbjct: 412 VFINRPPTTHKHSLQALSVYVHDDHAVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEV 471

Query: 106 WKLFSVVGKQLFSSHNG 56
            +LFS V KQL SSH+G
Sbjct: 472 LELFS-VEKQLLSSHSG 487


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 842

 Score =  169 bits (428), Expect = 3e-40
 Identities = 109/197 (55%), Positives = 126/197 (63%), Gaps = 20/197 (10%)
 Frame = -3

Query: 586 KREPNDSSTKVWLEKMRTLF--------SLWVFLS*YYG**SI*RVG*NWFAF*NSSKNY 431
           K++ ++SSTK WLEKMRTLF        S  V     Y    + +VG  +      ++  
Sbjct: 216 KKDSSESSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYT--KVNQVGIPY----EIAQRI 269

Query: 430 F*GESEST--------ICEQKLCLTYRDGSSTYSLWEGSKGHTFLRPGQVVHRRIMDGDI 275
              E  S         + + KLCLTYRDGSSTYSL EGSKGHTFLRPGQVVHRRI+DGD+
Sbjct: 270 TFEERVSVHNMRYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIIDGDV 329

Query: 274 VFINRPPATHKCSL--LSIIGI**RC--INPLICAPLSADFDGDAIHLFYP*SRPAKAEV 107
           VFINRPP THK SL  LS+         INPLIC PLSADFDGD +HLFYP S  AKAEV
Sbjct: 330 VFINRPPTTHKHSLQALSVYVHDDHTVKINPLICGPLSADFDGDCVHLFYPQSLAAKAEV 389

Query: 106 WKLFSVVGKQLFSSHNG 56
            +LFS V KQL SSH+G
Sbjct: 390 LELFS-VEKQLLSSHSG 405


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  168 bits (425), Expect = 7e-40
 Identities = 110/193 (56%), Positives = 121/193 (62%), Gaps = 17/193 (8%)
 Frame = -3

Query: 583 REPNDSSTKVWLEKMRTLF--------SLWVFLS*YYG**SI*RVG*-----NWFAF*NS 443
           +E NDSSTK WLEKMRTLF        S  V     Y    +  +G          F   
Sbjct: 299 KESNDSSTKAWLEKMRTLFIRKGSGFSSRSVITGDAYK--CVNEIGIPSEIAQRITF-EE 355

Query: 442 SKNYF*GESESTICEQKLCLTYRDGSSTYSLWEGSKGHTFLRPGQVVHRRIMDGDIVFIN 263
             N    +    + + KLCLTYRDGSSTYSL EGSKGHTFLR GQ+VHRRIMDGD+VFIN
Sbjct: 356 RVNAHNMQYLQELVDNKLCLTYRDGSSTYSLREGSKGHTFLRLGQIVHRRIMDGDMVFIN 415

Query: 262 RPPATHKCSL--LSIIGI**RC--INPLICAPLSADFDGDAIHLFYP*SRPAKAEVWKLF 95
           RPP THK SL  LS+         INPLIC PLSADFDGD IHLFYP S  AKAEV +LF
Sbjct: 416 RPPTTHKHSLQALSVYVHDGHTVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELF 475

Query: 94  SVVGKQLFSSHNG 56
           S V KQL SSH+G
Sbjct: 476 S-VEKQLLSSHSG 487