BLASTX nr result

ID: Panax21_contig00032666 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032666
         (420 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI15085.3| unnamed protein product [Vitis vinifera]              119   2e-25
ref|XP_002283633.1| PREDICTED: endonuclease III-like [Vitis vini...   119   2e-25
ref|XP_004152461.1| PREDICTED: DEMETER-like protein 2-like [Cucu...   104   8e-21
ref|XP_002875868.1| predicted protein [Arabidopsis lyrata subsp....   104   8e-21
ref|XP_003608916.1| Ultraviolet N-glycosylase/AP lyase [Medicago...   103   1e-20

>emb|CBI15085.3| unnamed protein product [Vitis vinifera]
          Length = 310

 Score =  119 bits (299), Expect = 2e-25
 Identities = 63/111 (56%), Positives = 73/111 (65%), Gaps = 14/111 (12%)
 Frame = +2

Query: 128 IKDPFPDFSHPTPEECRGVRDDLLALHGFPLEFLKYQRKQTPNHSATSEPS-DGGGGP-- 298
           + DP+P    PTP ECR VRDDLLALHGFP  F KY++ + P    TS P  DGGGG   
Sbjct: 29  VVDPYPSHPRPTPVECRAVRDDLLALHGFPQRFEKYRKLRLPPLPHTSSPGLDGGGGTPV 88

Query: 299 -----------AEAEKESVLDGLVSTILSQNTTDANSRRAFASLKSLYPSW 418
                        ++KESVLDGLVS ILSQNTTD NS+RAFASLKS +P+W
Sbjct: 89  KLDPSDGDDVNGSSQKESVLDGLVSIILSQNTTDVNSQRAFASLKSAFPTW 139


>ref|XP_002283633.1| PREDICTED: endonuclease III-like [Vitis vinifera]
          Length = 310

 Score =  119 bits (299), Expect = 2e-25
 Identities = 63/111 (56%), Positives = 73/111 (65%), Gaps = 14/111 (12%)
 Frame = +2

Query: 128 IKDPFPDFSHPTPEECRGVRDDLLALHGFPLEFLKYQRKQTPNHSATSEPS-DGGGGP-- 298
           + DP+P    PTP ECR VRDDLLALHGFP  F KY++ + P    TS P  DGGGG   
Sbjct: 29  VVDPYPSHPRPTPVECRAVRDDLLALHGFPQRFEKYRKLRLPPLPHTSSPGLDGGGGTPV 88

Query: 299 -----------AEAEKESVLDGLVSTILSQNTTDANSRRAFASLKSLYPSW 418
                        ++KESVLDGLVS ILSQNTTD NS+RAFASLKS +P+W
Sbjct: 89  KLDPSDGDDVNGSSQKESVLDGLVSIILSQNTTDVNSQRAFASLKSAFPTW 139


>ref|XP_004152461.1| PREDICTED: DEMETER-like protein 2-like [Cucumis sativus]
          Length = 234

 Score =  104 bits (259), Expect = 8e-21
 Identities = 56/102 (54%), Positives = 66/102 (64%), Gaps = 7/102 (6%)
 Frame = +2

Query: 134 DPFPDFSHPTPEECRGVRDDLLALHGFPLEFLKYQRKQTPNHSATS-------EPSDGGG 292
           DP+P  S PT +EC  VRDDLL LHGFP EFLKY++++       S       E  D   
Sbjct: 42  DPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSVVDGVRAEHRDNVE 101

Query: 293 GPAEAEKESVLDGLVSTILSQNTTDANSRRAFASLKSLYPSW 418
                EKESVLDGLV T+LSQNTT+ANS RAFASLKS + +W
Sbjct: 102 SEFVDEKESVLDGLVKTVLSQNTTEANSERAFASLKSAFAAW 143


>ref|XP_002875868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297321706|gb|EFH52127.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 294

 Score =  104 bits (259), Expect = 8e-21
 Identities = 59/116 (50%), Positives = 76/116 (65%), Gaps = 14/116 (12%)
 Frame = +2

Query: 113 SPSIKI----KDPFPDFSHPTPEECRGVRDDLLALHGFPLEFLKYQRKQTPNHSAT---- 268
           +P+IK      +P+P    PT EECR VRD LL+LHGFP EF  Y+R++  + SA     
Sbjct: 19  TPAIKSTVDGSNPYPTLLRPTAEECREVRDALLSLHGFPPEFANYRRQRLRSLSAVDGHD 78

Query: 269 ------SEPSDGGGGPAEAEKESVLDGLVSTILSQNTTDANSRRAFASLKSLYPSW 418
                 SEP D      EAE+ESVLDGLV  +LSQNTT++NS+RAFASLK+ +P+W
Sbjct: 79  TQCTMKSEPLD------EAEEESVLDGLVKILLSQNTTESNSQRAFASLKAAFPNW 128


>ref|XP_003608916.1| Ultraviolet N-glycosylase/AP lyase [Medicago truncatula]
           gi|355509971|gb|AES91113.1| Ultraviolet N-glycosylase/AP
           lyase [Medicago truncatula]
          Length = 280

 Score =  103 bits (257), Expect = 1e-20
 Identities = 57/104 (54%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
 Frame = +2

Query: 116 PSIKI---KDPFPDFSHPTPEECRGVRDDLLALHGFPLEFLKYQRKQTPNHSATSEPSDG 286
           P IK    K+PFP  S PTP+EC  +RD+LL+LHG P E  KY++ Q  N   T EP   
Sbjct: 25  PQIKTENPKNPFPSHSAPTPQECLEIRDNLLSLHGIPPELAKYRKSQQTND--TVEPP-- 80

Query: 287 GGGPAEAEKESVLDGLVSTILSQNTTDANSRRAFASLKSLYPSW 418
                    E+VLDGLV TILSQNTT+ANS +AFASLKSL+P+W
Sbjct: 81  ---------ETVLDGLVRTILSQNTTEANSNKAFASLKSLFPTW 115


Top