BLASTX nr result

ID: Panax21_contig00032629 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032629
         (388 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|2...    62   5e-08
ref|XP_002308787.1| f-box family protein [Populus trichocarpa] g...    61   8e-08
ref|XP_002531144.1| conserved hypothetical protein [Ricinus comm...    60   2e-07
ref|XP_004139617.1| PREDICTED: F-box protein CPR30-like [Cucumis...    59   4e-07
ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|2...    59   4e-07

>ref|XP_002308788.1| predicted protein [Populus trichocarpa] gi|222854764|gb|EEE92311.1|
           predicted protein [Populus trichocarpa]
          Length = 400

 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 30/60 (50%), Positives = 39/60 (65%), Gaps = 6/60 (10%)
 Frame = +1

Query: 70  DIWVMKEYGVKESWTKLIST-----TQPFEFVKPLAYSKCGEQLLLD-KFQRFLWYDLTN 231
           D+WVMKEYGVKESW K+ S         F F++PL YSK G+ +LL+   ++ LWYD  N
Sbjct: 285 DVWVMKEYGVKESWCKMFSVHAIKWISAFMFLRPLVYSKGGDMVLLEVNGEKLLWYDWKN 344


>ref|XP_002308787.1| f-box family protein [Populus trichocarpa]
           gi|222854763|gb|EEE92310.1| f-box family protein
           [Populus trichocarpa]
          Length = 396

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 7/59 (11%)
 Frame = +1

Query: 70  DIWVMKEYGVKESWTKLISTTQPFEFV------KPLAYSKCGEQLLLDKFQRFL-WYDL 225
           D+W+MKEYGVKESWTKL S  Q +E +      KPLAYSK G+++L++     L WYDL
Sbjct: 276 DVWMMKEYGVKESWTKLFSVAQ-YEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYDL 333


>ref|XP_002531144.1| conserved hypothetical protein [Ricinus communis]
           gi|223529257|gb|EEF31229.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 389

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 4/66 (6%)
 Frame = +1

Query: 70  DIWVMKEYGVKESWTKLISTTQ---PFEFVKPLAYSKCGEQLLLD-KFQRFLWYDLTNIC 237
           D+W+MKEYGVKESWTKL S       ++F++PL++ K G ++LL+    R +WYD+    
Sbjct: 293 DVWMMKEYGVKESWTKLCSIPHIETCYDFIRPLSFWKRGSEVLLELDDARIVWYDIEKKR 352

Query: 238 FRSLVL 255
            R ++L
Sbjct: 353 VRDVLL 358


>ref|XP_004139617.1| PREDICTED: F-box protein CPR30-like [Cucumis sativus]
           gi|449508988|ref|XP_004163461.1| PREDICTED: F-box
           protein CPR30-like [Cucumis sativus]
          Length = 179

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 29/58 (50%), Positives = 40/58 (68%), Gaps = 6/58 (10%)
 Frame = +1

Query: 70  DIWVMKEYGVKESWTKLISTTQ-----PFEFVKPLAYSKCG-EQLLLDKFQRFLWYDL 225
           ++WVMKEYGV+ESW KL++ +Q       + VKPL YSK G + LLL   ++ +WYDL
Sbjct: 71  EVWVMKEYGVQESWMKLLTVSQVDFVGSIKSVKPLTYSKTGCKVLLLHNRRKLIWYDL 128


>ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1|
           predicted protein [Populus trichocarpa]
          Length = 408

 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 7/59 (11%)
 Frame = +1

Query: 70  DIWVMKEYGVKESWTKLISTTQPFE------FVKPLAYSKCGEQLLLDKFQR-FLWYDL 225
           +IWVMKEYGVKESWT L +     +        +PLAYSK G+++LL+   R F+WYDL
Sbjct: 286 EIWVMKEYGVKESWTHLCTVIAQLQVKAFWLHARPLAYSKGGDKILLELDNRFFVWYDL 344


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