BLASTX nr result

ID: Panax21_contig00032618 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032618
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40586.3| unnamed protein product [Vitis vinifera]              112   2e-23
ref|XP_002267122.1| PREDICTED: DNA-directed RNA polymerase III s...   112   2e-23
ref|XP_004158339.1| PREDICTED: DNA-directed RNA polymerase III s...   100   1e-19
ref|XP_004141147.1| PREDICTED: DNA-directed RNA polymerase III s...   100   1e-19
gb|AFK43219.1| unknown [Lotus japonicus]                               94   9e-18

>emb|CBI40586.3| unnamed protein product [Vitis vinifera]
          Length = 175

 Score =  112 bits (281), Expect = 2e-23
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +3

Query: 3   IEPVFSKDDMKNAPTTEATCPNCRFGKAAFYQIQIRSADEPMSTFYLCLNEDCGHQWRED 182
           IEP+FSKDDMKN PTT+ATCP+C FGKA F Q+Q RSADEPMSTFY CLNE+CG QWRED
Sbjct: 116 IEPIFSKDDMKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRED 175


>ref|XP_002267122.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
           [Vitis vinifera]
          Length = 111

 Score =  112 bits (281), Expect = 2e-23
 Identities = 48/60 (80%), Positives = 53/60 (88%)
 Frame = +3

Query: 3   IEPVFSKDDMKNAPTTEATCPNCRFGKAAFYQIQIRSADEPMSTFYLCLNEDCGHQWRED 182
           IEP+FSKDDMKN PTT+ATCP+C FGKA F Q+Q RSADEPMSTFY CLNE+CG QWRED
Sbjct: 52  IEPIFSKDDMKNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENCGRQWRED 111


>ref|XP_004158339.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
           [Cucumis sativus]
          Length = 112

 Score =  100 bits (249), Expect = 1e-19
 Identities = 43/60 (71%), Positives = 49/60 (81%)
 Frame = +3

Query: 3   IEPVFSKDDMKNAPTTEATCPNCRFGKAAFYQIQIRSADEPMSTFYLCLNEDCGHQWRED 182
           +EP+ S DDMKNA  TEATCPNC FGKAAF QIQ+RSADEP +TFY C+NE+C   WRED
Sbjct: 53  LEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 112


>ref|XP_004141147.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
           [Cucumis sativus]
          Length = 111

 Score =  100 bits (249), Expect = 1e-19
 Identities = 43/60 (71%), Positives = 49/60 (81%)
 Frame = +3

Query: 3   IEPVFSKDDMKNAPTTEATCPNCRFGKAAFYQIQIRSADEPMSTFYLCLNEDCGHQWRED 182
           +EP+ S DDMKNA  TEATCPNC FGKAAF QIQ+RSADEP +TFY C+NE+C   WRED
Sbjct: 52  LEPIISDDDMKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNWRED 111


>gb|AFK43219.1| unknown [Lotus japonicus]
          Length = 111

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 41/60 (68%), Positives = 46/60 (76%)
 Frame = +3

Query: 3   IEPVFSKDDMKNAPTTEATCPNCRFGKAAFYQIQIRSADEPMSTFYLCLNEDCGHQWRED 182
           I+PV S DDMKN PTTE  CPNC   KAA+ ++QIRSADEP + FY CLNE C HQWRED
Sbjct: 52  IDPVISYDDMKNGPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQWRED 111


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