BLASTX nr result

ID: Panax21_contig00032475 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032475
         (399 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|2...   107   1e-21
ref|XP_002329763.1| predicted protein [Populus trichocarpa] gi|2...    99   4e-19
ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal doma...    97   2e-18
ref|XP_002267987.2| PREDICTED: RNA polymerase II C-terminal doma...    96   2e-18
emb|CBI35689.3| unnamed protein product [Vitis vinifera]               96   2e-18

>ref|XP_002305017.1| predicted protein [Populus trichocarpa] gi|222847981|gb|EEE85528.1|
            predicted protein [Populus trichocarpa]
          Length = 967

 Score =  107 bits (266), Expect = 1e-21
 Identities = 52/70 (74%), Positives = 58/70 (82%)
 Frame = +3

Query: 3    GLTWDEAKIQAADKALGSLRSMLGHFSHKRQGSPRLLQGMSNNRLKPEFTGVQQRFPSSA 182
            GLTWDEAK+QAA+KALGSLR+M G ++ KRQGSPRL+QGM N RLK EF  V QR PSSA
Sbjct: 898  GLTWDEAKMQAAEKALGSLRTMFGQYTPKRQGSPRLMQGMPNKRLKQEFPRVLQRMPSSA 957

Query: 183  RYPNNASPVP 212
            RY  NASPVP
Sbjct: 958  RYHKNASPVP 967


>ref|XP_002329763.1| predicted protein [Populus trichocarpa] gi|222870825|gb|EEF07956.1|
           predicted protein [Populus trichocarpa]
          Length = 224

 Score = 99.0 bits (245), Expect = 4e-19
 Identities = 48/70 (68%), Positives = 54/70 (77%)
 Frame = +3

Query: 3   GLTWDEAKIQAADKALGSLRSMLGHFSHKRQGSPRLLQGMSNNRLKPEFTGVQQRFPSSA 182
           G TWDEAK+QAA+KALGSLR+M G ++ KRQGSPR +QGM N RLK EF  V QR P SA
Sbjct: 155 GSTWDEAKMQAAEKALGSLRTMFGQYTQKRQGSPRPMQGMPNKRLKQEFPRVLQRMPPSA 214

Query: 183 RYPNNASPVP 212
           RY  NA PVP
Sbjct: 215 RYHKNAPPVP 224


>ref|XP_003529311.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
            1-like [Glycine max]
          Length = 954

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 48/70 (68%), Positives = 52/70 (74%)
 Frame = +3

Query: 3    GLTWDEAKIQAADKALGSLRSMLGHFSHKRQGSPRLLQGMSNNRLKPEFTGVQQRFPSSA 182
            GLTWDEAK+QAA+KALGSLRS LG    KRQ SPR  QG SN RLK E+    QR PSSA
Sbjct: 885  GLTWDEAKMQAAEKALGSLRSKLGQSIQKRQSSPRPHQGFSNKRLKQEYPRPMQRMPSSA 944

Query: 183  RYPNNASPVP 212
            RYP NA P+P
Sbjct: 945  RYPRNAPPIP 954


>ref|XP_002267987.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1
           [Vitis vinifera]
          Length = 860

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/70 (71%), Positives = 54/70 (77%)
 Frame = +3

Query: 3   GLTWDEAKIQAADKALGSLRSMLGHFSHKRQGSPRLLQGMSNNRLKPEFTGVQQRFPSSA 182
           G TWD+AK+QAA+KALGSL+SMLG FS KRQGSPR LQGM   RLK EFT   QR PSS 
Sbjct: 792 GSTWDDAKMQAAEKALGSLKSMLGQFSQKRQGSPRSLQGM-GKRLKSEFTRGLQRTPSSG 850

Query: 183 RYPNNASPVP 212
           RY  N SPVP
Sbjct: 851 RYSKNTSPVP 860


>emb|CBI35689.3| unnamed protein product [Vitis vinifera]
          Length = 160

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/70 (71%), Positives = 54/70 (77%)
 Frame = +3

Query: 3   GLTWDEAKIQAADKALGSLRSMLGHFSHKRQGSPRLLQGMSNNRLKPEFTGVQQRFPSSA 182
           G TWD+AK+QAA+KALGSL+SMLG FS KRQGSPR LQGM   RLK EFT   QR PSS 
Sbjct: 92  GSTWDDAKMQAAEKALGSLKSMLGQFSQKRQGSPRSLQGM-GKRLKSEFTRGLQRTPSSG 150

Query: 183 RYPNNASPVP 212
           RY  N SPVP
Sbjct: 151 RYSKNTSPVP 160


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