BLASTX nr result

ID: Panax21_contig00032448 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032448
         (534 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002313060.1| predicted protein [Populus trichocarpa] gi|2...   113   2e-23
ref|XP_002280949.2| PREDICTED: HVA22-like protein k-like [Vitis ...   112   4e-23
ref|XP_002519085.1| pentatricopeptide repeat-containing protein,...   108   4e-22
emb|CBI17556.3| unnamed protein product [Vitis vinifera]              107   1e-21
ref|XP_002310796.1| predicted protein [Populus trichocarpa] gi|2...   107   1e-21

>ref|XP_002313060.1| predicted protein [Populus trichocarpa] gi|222849468|gb|EEE87015.1|
           predicted protein [Populus trichocarpa]
          Length = 189

 Score =  113 bits (283), Expect = 2e-23
 Identities = 54/83 (65%), Positives = 60/83 (72%)
 Frame = -3

Query: 532 PVYSTFKAIETKDRNEQQRWLVYWAGGPVFIEL*RLEGCYNQNIAYGSFSVAEIFADKFI 353
           P+YSTFKAIE KD+ EQQRWL+YWA                   AYGSFS+AE+FADK +
Sbjct: 34  PIYSTFKAIENKDQIEQQRWLLYWA-------------------AYGSFSLAEVFADKIL 74

Query: 352 SWFPLYYHMKFAFLVWLQLPSVN 284
           SWFPLYYHMKFAFLVWLQLPS N
Sbjct: 75  SWFPLYYHMKFAFLVWLQLPSAN 97


>ref|XP_002280949.2| PREDICTED: HVA22-like protein k-like [Vitis vinifera]
           gi|297741427|emb|CBI32558.3| unnamed protein product
           [Vitis vinifera]
          Length = 214

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/83 (66%), Positives = 59/83 (71%)
 Frame = -3

Query: 532 PVYSTFKAIETKDRNEQQRWLVYWAGGPVFIEL*RLEGCYNQNIAYGSFSVAEIFADKFI 353
           PVYSTFKAIE KD+NEQQRWLVYWA                   AYGSFS+AE FADK +
Sbjct: 39  PVYSTFKAIEKKDQNEQQRWLVYWA-------------------AYGSFSLAEAFADKVL 79

Query: 352 SWFPLYYHMKFAFLVWLQLPSVN 284
            WFPLYYHMKFAFLVWLQLPS +
Sbjct: 80  YWFPLYYHMKFAFLVWLQLPSTD 102


>ref|XP_002519085.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541748|gb|EEF43296.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 1157

 Score =  108 bits (271), Expect = 4e-22
 Identities = 52/83 (62%), Positives = 60/83 (72%)
 Frame = -3

Query: 532  PVYSTFKAIETKDRNEQQRWLVYWAGGPVFIEL*RLEGCYNQNIAYGSFSVAEIFADKFI 353
            PVYSTFKAIE +D  +QQ+WL+YWA                   AYG+FSVAE+FADK +
Sbjct: 1008 PVYSTFKAIENRDLIDQQKWLLYWA-------------------AYGTFSVAEVFADKVL 1048

Query: 352  SWFPLYYHMKFAFLVWLQLPSVN 284
            SWFPLYYH+KFAFLVWLQLPSVN
Sbjct: 1049 SWFPLYYHVKFAFLVWLQLPSVN 1071


>emb|CBI17556.3| unnamed protein product [Vitis vinifera]
          Length = 142

 Score =  107 bits (267), Expect = 1e-21
 Identities = 54/101 (53%), Positives = 67/101 (66%), Gaps = 2/101 (1%)
 Frame = -3

Query: 532 PVYSTFKAIETKDRNEQQRWLVYWAGGPVFIEL*RLEGCYNQNIAYGSFSVAEIFADKFI 353
           PVYSTFKAIE KD+NE+QRWL+YWA                   AYGSFS+ E+FADK I
Sbjct: 40  PVYSTFKAIERKDQNEEQRWLLYWA-------------------AYGSFSLVEVFADKLI 80

Query: 352 SWFPLYYHMKFAFLVWLQLPSVNVSFKTF-CFL-AYYVTHE 236
           SW PLYYH+KFAFLVWLQ PS   +   + C+L  +++ H+
Sbjct: 81  SWSPLYYHLKFAFLVWLQFPSSGGARHLYMCYLRPFFLRHQ 121


>ref|XP_002310796.1| predicted protein [Populus trichocarpa] gi|222853699|gb|EEE91246.1|
           predicted protein [Populus trichocarpa]
          Length = 196

 Score =  107 bits (267), Expect = 1e-21
 Identities = 50/81 (61%), Positives = 57/81 (70%)
 Frame = -3

Query: 532 PVYSTFKAIETKDRNEQQRWLVYWAGGPVFIEL*RLEGCYNQNIAYGSFSVAEIFADKFI 353
           PVY TFKAIE KD NE+Q+WL+YWA                   AYGSF++AE+F DK I
Sbjct: 39  PVYHTFKAIERKDENEEQKWLMYWA-------------------AYGSFTLAEVFTDKLI 79

Query: 352 SWFPLYYHMKFAFLVWLQLPS 290
           SWFP+YYHMKFAFLVWLQLPS
Sbjct: 80  SWFPMYYHMKFAFLVWLQLPS 100


Top