BLASTX nr result
ID: Panax21_contig00032227
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00032227
(814 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi... 148 9e-71
gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabi... 148 9e-71
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal... 148 2e-70
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana] 148 6e-70
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana] 145 7e-70
>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 148 bits (374), Expect(3) = 9e-71
Identities = 71/121 (58%), Positives = 86/121 (71%)
Frame = -2
Query: 498 YKNGEDMNLFDYSDSDWGGDQDESKSTSGYLFYLGSTAFTWVSKKQSIVALSSCEAEYVA 319
Y D L YSDSDWGGD D+ KSTSG++FY+G TAFTW+SKKQ IV LS+CEAEYVA
Sbjct: 1182 YSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVVLSTCEAEYVA 1241
Query: 318 ATRAISELIWLQNL*KTLYHGQEDSSVLYVDNMSAIELTKNPLQHGRSRHINMRSFYSRP 139
AT + IWL+NL K L QE+ + ++VDN SAI L KNP+ H RS+HI+ R Y R
Sbjct: 1242 ATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRE 1301
Query: 138 C 136
C
Sbjct: 1302 C 1302
Score = 117 bits (293), Expect(3) = 9e-71
Identities = 56/95 (58%), Positives = 76/95 (80%)
Frame = -1
Query: 787 FAKEILEKFQMSLCKAVSTPVATGLKLTKEGEGRLINPTLFKSLIGSLRYLTNTMPNIVF 608
+AKE+L+KF+M V TP+ G+KL+K+ EG ++PT FKSL+GSLRYLT T P+I++
Sbjct: 1086 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1145
Query: 607 GVGLLSRYMETPKDSHWVAAKRILRYIKGTLDFGL 503
VG++SRYME P +H+ AAKRILRYIKGT++FGL
Sbjct: 1146 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGL 1180
Score = 49.3 bits (116), Expect(3) = 9e-71
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -3
Query: 155 HFIRDHVKKKTVEVEYCRSQDQVADILTKPLSANTHQGFRTLLGM 21
H+IR+ V KK V++EY ++ DQVADI TKPL R+LLG+
Sbjct: 1297 HYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGV 1341
>gb|AAG50698.1|AC079604_5 copia-type polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 148 bits (374), Expect(3) = 9e-71
Identities = 71/121 (58%), Positives = 86/121 (71%)
Frame = -2
Query: 498 YKNGEDMNLFDYSDSDWGGDQDESKSTSGYLFYLGSTAFTWVSKKQSIVALSSCEAEYVA 319
Y D L YSDSDWGGD D+ KSTSG++FY+G TAFTW+SKKQ IV LS+CEAEYVA
Sbjct: 1150 YSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVA 1209
Query: 318 ATRAISELIWLQNL*KTLYHGQEDSSVLYVDNMSAIELTKNPLQHGRSRHINMRSFYSRP 139
AT + IWL+NL K L QE+ + ++VDN SAI L KNP+ H RS+HI+ R Y R
Sbjct: 1210 ATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRE 1269
Query: 138 C 136
C
Sbjct: 1270 C 1270
Score = 117 bits (293), Expect(3) = 9e-71
Identities = 56/95 (58%), Positives = 76/95 (80%)
Frame = -1
Query: 787 FAKEILEKFQMSLCKAVSTPVATGLKLTKEGEGRLINPTLFKSLIGSLRYLTNTMPNIVF 608
+AKE+L+KF+M V TP+ G+KL+K+ EG ++PT FKSL+GSLRYLT T P+I++
Sbjct: 1054 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1113
Query: 607 GVGLLSRYMETPKDSHWVAAKRILRYIKGTLDFGL 503
VG++SRYME P +H+ AAKRILRYIKGT++FGL
Sbjct: 1114 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGL 1148
Score = 49.3 bits (116), Expect(3) = 9e-71
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -3
Query: 155 HFIRDHVKKKTVEVEYCRSQDQVADILTKPLSANTHQGFRTLLGM 21
H+IR+ V KK V++EY ++ DQVADI TKPL R+LLG+
Sbjct: 1265 HYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGV 1309
>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
Length = 1352
Score = 148 bits (374), Expect(3) = 2e-70
Identities = 71/121 (58%), Positives = 86/121 (71%)
Frame = -2
Query: 498 YKNGEDMNLFDYSDSDWGGDQDESKSTSGYLFYLGSTAFTWVSKKQSIVALSSCEAEYVA 319
Y D L YSDSDWGGD D+ KSTSG++FY+G TAFTW+SKKQ IV LS+CEAEYVA
Sbjct: 1182 YSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVA 1241
Query: 318 ATRAISELIWLQNL*KTLYHGQEDSSVLYVDNMSAIELTKNPLQHGRSRHINMRSFYSRP 139
AT + IWL+NL K L QE+ + ++VDN SAI L KNP+ H RS+HI+ R Y R
Sbjct: 1242 ATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRE 1301
Query: 138 C 136
C
Sbjct: 1302 C 1302
Score = 117 bits (293), Expect(3) = 2e-70
Identities = 56/95 (58%), Positives = 76/95 (80%)
Frame = -1
Query: 787 FAKEILEKFQMSLCKAVSTPVATGLKLTKEGEGRLINPTLFKSLIGSLRYLTNTMPNIVF 608
+AKE+L+KF+M V TP+ G+KL+K+ EG ++PT FKSL+GSLRYLT T P+I++
Sbjct: 1086 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1145
Query: 607 GVGLLSRYMETPKDSHWVAAKRILRYIKGTLDFGL 503
VG++SRYME P +H+ AAKRILRYIKGT++FGL
Sbjct: 1146 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGL 1180
Score = 48.1 bits (113), Expect(3) = 2e-70
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = -3
Query: 155 HFIRDHVKKKTVEVEYCRSQDQVADILTKPLSANTHQGFRTLLGM 21
H+IR+ V KK V++EY ++ DQVAD TKPL R+LLG+
Sbjct: 1297 HYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKMRSLLGV 1341
>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
Length = 1352
Score = 148 bits (374), Expect(3) = 6e-70
Identities = 71/121 (58%), Positives = 86/121 (71%)
Frame = -2
Query: 498 YKNGEDMNLFDYSDSDWGGDQDESKSTSGYLFYLGSTAFTWVSKKQSIVALSSCEAEYVA 319
Y D L YSDSDWGGD D+ KSTSG++FY+G TAFTW+SKKQ IV LS+CEAEYVA
Sbjct: 1182 YSTTSDYKLVGYSDSDWGGDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVA 1241
Query: 318 ATRAISELIWLQNL*KTLYHGQEDSSVLYVDNMSAIELTKNPLQHGRSRHINMRSFYSRP 139
AT + IWL+NL K L QE+ + ++VDN SAI L KNP+ H RS+HI+ R Y R
Sbjct: 1242 ATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRE 1301
Query: 138 C 136
C
Sbjct: 1302 C 1302
Score = 115 bits (289), Expect(3) = 6e-70
Identities = 55/95 (57%), Positives = 76/95 (80%)
Frame = -1
Query: 787 FAKEILEKFQMSLCKAVSTPVATGLKLTKEGEGRLINPTLFKSLIGSLRYLTNTMPNIVF 608
+AKE+L+KF++ V TP+ G+KL+K+ EG ++PT FKSL+GSLRYLT T P+I++
Sbjct: 1086 YAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1145
Query: 607 GVGLLSRYMETPKDSHWVAAKRILRYIKGTLDFGL 503
VG++SRYME P +H+ AAKRILRYIKGT++FGL
Sbjct: 1146 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGL 1180
Score = 48.1 bits (113), Expect(3) = 6e-70
Identities = 22/45 (48%), Positives = 30/45 (66%)
Frame = -3
Query: 155 HFIRDHVKKKTVEVEYCRSQDQVADILTKPLSANTHQGFRTLLGM 21
H+IR+ V KK V++EY ++ DQVAD TKPL R+LLG+
Sbjct: 1297 HYIRECVSKKDVQLEYVKTHDQVADFFTKPLKRENFIKMRSLLGV 1341
>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 145 bits (366), Expect(3) = 7e-70
Identities = 70/121 (57%), Positives = 85/121 (70%)
Frame = -2
Query: 498 YKNGEDMNLFDYSDSDWGGDQDESKSTSGYLFYLGSTAFTWVSKKQSIVALSSCEAEYVA 319
Y D L YSDSDWG D D+ KSTSG++FY+G TAFTW+SKKQ IV LS+CEAEYVA
Sbjct: 1121 YSTTSDYKLVGYSDSDWGRDVDDRKSTSGFVFYIGDTAFTWMSKKQPIVTLSTCEAEYVA 1180
Query: 318 ATRAISELIWLQNL*KTLYHGQEDSSVLYVDNMSAIELTKNPLQHGRSRHINMRSFYSRP 139
AT + IWL+NL K L QE+ + ++VDN SAI L KNP+ H RS+HI+ R Y R
Sbjct: 1181 ATSCVCHAIWLRNLLKELSLPQEEPTKIFVDNKSAIALAKNPVFHDRSKHIDTRYHYIRE 1240
Query: 138 C 136
C
Sbjct: 1241 C 1241
Score = 117 bits (293), Expect(3) = 7e-70
Identities = 56/95 (58%), Positives = 76/95 (80%)
Frame = -1
Query: 787 FAKEILEKFQMSLCKAVSTPVATGLKLTKEGEGRLINPTLFKSLIGSLRYLTNTMPNIVF 608
+AKE+L+KF+M V TP+ G+KL+K+ EG ++PT FKSL+GSLRYLT T P+I++
Sbjct: 1025 YAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTRPDILY 1084
Query: 607 GVGLLSRYMETPKDSHWVAAKRILRYIKGTLDFGL 503
VG++SRYME P +H+ AAKRILRYIKGT++FGL
Sbjct: 1085 AVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGL 1119
Score = 49.3 bits (116), Expect(3) = 7e-70
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = -3
Query: 155 HFIRDHVKKKTVEVEYCRSQDQVADILTKPLSANTHQGFRTLLGM 21
H+IR+ V KK V++EY ++ DQVADI TKPL R+LLG+
Sbjct: 1236 HYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGV 1280