BLASTX nr result

ID: Panax21_contig00032218 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00032218
         (585 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528998.1| DNA binding protein, putative [Ricinus commu...   177   2e-42
ref|XP_002275451.1| PREDICTED: SWI/SNF complex subunit SWI3B [Vi...   174   8e-42
ref|XP_002300622.1| chromatin remodeling complex subunit [Populu...   170   2e-40
ref|XP_004157113.1| PREDICTED: SWI/SNF complex subunit SWI3B-lik...   169   3e-40
ref|XP_004145606.1| PREDICTED: SWI/SNF complex subunit SWI3B-lik...   169   3e-40

>ref|XP_002528998.1| DNA binding protein, putative [Ricinus communis]
           gi|223531538|gb|EEF33368.1| DNA binding protein,
           putative [Ricinus communis]
          Length = 482

 Score =  177 bits (448), Expect = 2e-42
 Identities = 81/107 (75%), Positives = 94/107 (87%), Gaps = 1/107 (0%)
 Frame = -1

Query: 333 DVILIPSHSRWFSWSSIHECEVRFLPEFFEGRSASKNPRVYKYYRNSIIQRFRE-NPNRK 157
           DV+ IPS+SRWFSW+SIHECEVRFLP+FF+ RS SKNPRVYKYYRNSII+ FR+ NP+ K
Sbjct: 61  DVVHIPSYSRWFSWNSIHECEVRFLPDFFDSRSPSKNPRVYKYYRNSIIKCFRQNNPSVK 120

Query: 156 ITFTEARKTIIGDVGSVRRIFDFLETWGLINYLGSPSSKPQKWEDKE 16
           ITFTE RKT++GDVGS+RR+FDFLE WGLINY  S  SKP KWEDK+
Sbjct: 121 ITFTEVRKTLVGDVGSIRRVFDFLEAWGLINYFPSALSKPLKWEDKD 167


>ref|XP_002275451.1| PREDICTED: SWI/SNF complex subunit SWI3B [Vitis vinifera]
           gi|297745602|emb|CBI40767.3| unnamed protein product
           [Vitis vinifera]
          Length = 492

 Score =  174 bits (442), Expect = 8e-42
 Identities = 75/106 (70%), Positives = 92/106 (86%)
 Frame = -1

Query: 333 DVILIPSHSRWFSWSSIHECEVRFLPEFFEGRSASKNPRVYKYYRNSIIQRFRENPNRKI 154
           + I IPS+SRWFSW+++HECEVRFLPEFF+ RS SKNPRVYKYYRNSII  FR+NP+RK+
Sbjct: 56  ETINIPSYSRWFSWNNVHECEVRFLPEFFDARSPSKNPRVYKYYRNSIILSFRQNPSRKL 115

Query: 153 TFTEARKTIIGDVGSVRRIFDFLETWGLINYLGSPSSKPQKWEDKE 16
           TFT+ RK ++GDVGS+RR+FDFLE WGLINY GS   +P KWE+K+
Sbjct: 116 TFTDVRKILVGDVGSIRRVFDFLEAWGLINYSGSALKQPLKWEEKD 161


>ref|XP_002300622.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222842348|gb|EEE79895.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 500

 Score =  170 bits (430), Expect = 2e-40
 Identities = 76/104 (73%), Positives = 90/104 (86%)
 Frame = -1

Query: 333 DVILIPSHSRWFSWSSIHECEVRFLPEFFEGRSASKNPRVYKYYRNSIIQRFRENPNRKI 154
           DV+ IPS+SRWFSW +IHECEVRFLPEFF+ RS SKNP VYKYYRNSII +FR+NP+ K+
Sbjct: 48  DVVHIPSYSRWFSWDNIHECEVRFLPEFFDSRSPSKNPSVYKYYRNSIISQFRKNPSAKL 107

Query: 153 TFTEARKTIIGDVGSVRRIFDFLETWGLINYLGSPSSKPQKWED 22
           TFTE RKT++GDVGS+RR+FDFL+ WGLINY  SP +K  KWED
Sbjct: 108 TFTEIRKTLVGDVGSIRRVFDFLDAWGLINY--SPLNKQLKWED 149


>ref|XP_004157113.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Cucumis sativus]
          Length = 555

 Score =  169 bits (428), Expect = 3e-40
 Identities = 74/107 (69%), Positives = 91/107 (85%)
 Frame = -1

Query: 333 DVILIPSHSRWFSWSSIHECEVRFLPEFFEGRSASKNPRVYKYYRNSIIQRFRENPNRKI 154
           D I +PS+SRWFSW+ IHECEVRFLPEFF+ RS SKNPRVYKY RNSI++ FRE P++KI
Sbjct: 127 DPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECPSKKI 186

Query: 153 TFTEARKTIIGDVGSVRRIFDFLETWGLINYLGSPSSKPQKWEDKET 13
           TFT+ RKT++ DVGS+RR+FDFLE WGLINY  S  SKP KW+D+++
Sbjct: 187 TFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWDDRDS 233


>ref|XP_004145606.1| PREDICTED: SWI/SNF complex subunit SWI3B-like [Cucumis sativus]
          Length = 493

 Score =  169 bits (428), Expect = 3e-40
 Identities = 74/107 (69%), Positives = 91/107 (85%)
 Frame = -1

Query: 333 DVILIPSHSRWFSWSSIHECEVRFLPEFFEGRSASKNPRVYKYYRNSIIQRFRENPNRKI 154
           D I +PS+SRWFSW+ IHECEVRFLPEFF+ RS SKNPRVYKY RNSI++ FRE P++KI
Sbjct: 65  DPIHLPSYSRWFSWNGIHECEVRFLPEFFDSRSPSKNPRVYKYLRNSIVKNFRECPSKKI 124

Query: 153 TFTEARKTIIGDVGSVRRIFDFLETWGLINYLGSPSSKPQKWEDKET 13
           TFT+ RKT++ DVGS+RR+FDFLE WGLINY  S  SKP KW+D+++
Sbjct: 125 TFTDIRKTLVADVGSIRRVFDFLEAWGLINYSPSALSKPLKWDDRDS 171


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