BLASTX nr result

ID: Panax21_contig00031349 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00031349
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA32827.1| 98b [Daucus carota]                                   134   6e-30
ref|XP_004162361.1| PREDICTED: LOW QUALITY PROTEIN: high mobilit...   115   3e-24
ref|XP_004149754.1| PREDICTED: high mobility group B protein 13-...   115   3e-24
ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [S...   113   1e-23
ref|XP_002303636.1| high mobility group family [Populus trichoca...   113   2e-23

>dbj|BAA32827.1| 98b [Daucus carota]
          Length = 502

 Score =  134 bits (338), Expect = 6e-30
 Identities = 74/134 (55%), Positives = 78/134 (58%)
 Frame = +1

Query: 1   KEQYAQEMEVYKHKKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           K QY Q+MEVYK KKD                                            
Sbjct: 345 KNQYLQQMEVYKKKKDEEAASLQKEEEELSKIQKQEAMQLLKKKEKTENLIKKTKEERQK 404

Query: 181 XXXAEKNTVDPNKPKRPASSFLLFSKEARKTLVEERPGINNSTLNALISVKWKEISQEEK 360
               EK  VDPNKPKRPASSFLLFSKEARKT+ EERPGINNSTLNALISVKWKEIS EEK
Sbjct: 405 KQKGEKKIVDPNKPKRPASSFLLFSKEARKTISEERPGINNSTLNALISVKWKEISHEEK 464

Query: 361 QSWNQKAAGAMDAY 402
           Q WN+KAAGAM+AY
Sbjct: 465 QLWNEKAAGAMEAY 478


>ref|XP_004162361.1| PREDICTED: LOW QUALITY PROTEIN: high mobility group B protein
           13-like [Cucumis sativus]
          Length = 500

 Score =  115 bits (289), Expect = 3e-24
 Identities = 60/134 (44%), Positives = 79/134 (58%)
 Frame = +1

Query: 1   KEQYAQEMEVYKHKKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KE+Y QEME+Y+ KK+                                            
Sbjct: 343 KEKYMQEMEIYEQKKEEEAAILKKEEEEQMKVQKHEALLLLKKKXKTETIIKKSKEERQK 402

Query: 181 XXXAEKNTVDPNKPKRPASSFLLFSKEARKTLVEERPGINNSTLNALISVKWKEISQEEK 360
                KN VDPNKPK+PASS++LFSKEARK+++EE+PG++NST+NALISVKWKE+S+EE+
Sbjct: 403 KKKEGKNPVDPNKPKKPASSYILFSKEARKSVMEEKPGVSNSTVNALISVKWKELSEEER 462

Query: 361 QSWNQKAAGAMDAY 402
           + WN KAA AM+ Y
Sbjct: 463 KIWNDKAAEAMEGY 476


>ref|XP_004149754.1| PREDICTED: high mobility group B protein 13-like [Cucumis sativus]
          Length = 500

 Score =  115 bits (289), Expect = 3e-24
 Identities = 59/134 (44%), Positives = 78/134 (58%)
 Frame = +1

Query: 1   KEQYAQEMEVYKHKKDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180
           KE+Y QEME+Y+ KK+                                            
Sbjct: 343 KEKYMQEMEIYEQKKEEEAAILKKEEEEQMKVQKHEALLLLKKKEKTETIIKKSKEERQK 402

Query: 181 XXXAEKNTVDPNKPKRPASSFLLFSKEARKTLVEERPGINNSTLNALISVKWKEISQEEK 360
                KN VDPNKPK+PASS++LFSKEARK+++EE+PG++NST+NALISVKWKE+S+EE+
Sbjct: 403 KKKEGKNPVDPNKPKKPASSYILFSKEARKSVMEEKPGVSNSTVNALISVKWKELSEEER 462

Query: 361 QSWNQKAAGAMDAY 402
           + WN KAA AM+ Y
Sbjct: 463 KIWNDKAAEAMEGY 476


>ref|XP_002453635.1| hypothetical protein SORBIDRAFT_04g009610 [Sorghum bicolor]
           gi|241933466|gb|EES06611.1| hypothetical protein
           SORBIDRAFT_04g009610 [Sorghum bicolor]
          Length = 488

 Score =  113 bits (283), Expect = 1e-23
 Identities = 54/70 (77%), Positives = 62/70 (88%)
 Frame = +1

Query: 193 EKNTVDPNKPKRPASSFLLFSKEARKTLVEERPGINNSTLNALISVKWKEISQEEKQSWN 372
           ++   DPN+PKRPASSFLLFSKEARK L+EERPGINNS+LNALISVKWKE+S EE+Q+WN
Sbjct: 404 KQENADPNRPKRPASSFLLFSKEARKQLLEERPGINNSSLNALISVKWKELSGEERQAWN 463

Query: 373 QKAAGAMDAY 402
            KAA AM AY
Sbjct: 464 AKAAPAMAAY 473


>ref|XP_002303636.1| high mobility group family [Populus trichocarpa]
           gi|222841068|gb|EEE78615.1| high mobility group family
           [Populus trichocarpa]
          Length = 480

 Score =  113 bits (282), Expect = 2e-23
 Identities = 51/70 (72%), Positives = 63/70 (90%)
 Frame = +1

Query: 193 EKNTVDPNKPKRPASSFLLFSKEARKTLVEERPGINNSTLNALISVKWKEISQEEKQSWN 372
           ++  VDPNKPK+PASSFLLFSKE RK+L++ERPGINNSTL A+ISVKWKE+++EE+Q WN
Sbjct: 389 QQQNVDPNKPKKPASSFLLFSKETRKSLMDERPGINNSTLTAMISVKWKELNEEERQIWN 448

Query: 373 QKAAGAMDAY 402
            KAA AM+AY
Sbjct: 449 SKAAEAMEAY 458


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