BLASTX nr result

ID: Panax21_contig00031077 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00031077
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004170946.1| PREDICTED: LOW QUALITY PROTEIN: tubulin alph...   233   2e-59
ref|XP_004141134.1| PREDICTED: tubulin alpha-3 chain-like [Cucum...   233   2e-59
gb|AGG37284.1| alpha-tubulin 2 [Salix arbutifolia]                    232   3e-59
ref|XP_002303998.1| tubulin alpha-2 chain [Populus trichocarpa] ...   232   3e-59
emb|CAD24765.1| alpha-tubulin [Miscanthus sinensis]                   231   4e-59

>ref|XP_004170946.1| PREDICTED: LOW QUALITY PROTEIN: tubulin alpha-3 chain-like [Cucumis
           sativus]
          Length = 447

 Score =  233 bits (593), Expect = 2e-59
 Identities = 107/118 (90%), Positives = 115/118 (97%)
 Frame = +3

Query: 3   SCWELYCVEHGIQPDGNMPSDTSVGVANDSFNTFFSETNSGKHVPRAIFLDLEPTVVDEV 182
           SCWELYC+EHGIQPDG MPSDTSVGVA+D+FNTFFSET SGKHVPRAIF+DLEPTV+DEV
Sbjct: 19  SCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEV 78

Query: 183 RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKDIVDICLDRVRKLADNCAGLQGFL 356
           RTGTYRQLFHPEQLISGKEDAANNFARGHYTVG++IVD+CLDRVRKLADNC GLQGFL
Sbjct: 79  RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFL 136


>ref|XP_004141134.1| PREDICTED: tubulin alpha-3 chain-like [Cucumis sativus]
          Length = 449

 Score =  233 bits (593), Expect = 2e-59
 Identities = 107/118 (90%), Positives = 115/118 (97%)
 Frame = +3

Query: 3   SCWELYCVEHGIQPDGNMPSDTSVGVANDSFNTFFSETNSGKHVPRAIFLDLEPTVVDEV 182
           SCWELYC+EHGIQPDG MPSDTSVGVA+D+FNTFFSET SGKHVPRAIF+DLEPTV+DEV
Sbjct: 19  SCWELYCLEHGIQPDGLMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEV 78

Query: 183 RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKDIVDICLDRVRKLADNCAGLQGFL 356
           RTGTYRQLFHPEQLISGKEDAANNFARGHYTVG++IVD+CLDRVRKLADNC GLQGFL
Sbjct: 79  RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGREIVDLCLDRVRKLADNCTGLQGFL 136


>gb|AGG37284.1| alpha-tubulin 2 [Salix arbutifolia]
          Length = 450

 Score =  232 bits (591), Expect = 3e-59
 Identities = 107/118 (90%), Positives = 114/118 (96%)
 Frame = +3

Query: 3   SCWELYCVEHGIQPDGNMPSDTSVGVANDSFNTFFSETNSGKHVPRAIFLDLEPTVVDEV 182
           +CWELYC+EHGIQPDG MPSD SVGVA+D+FNTFFSET SGKHVPRAIFLDLEPTV+DEV
Sbjct: 19  ACWELYCLEHGIQPDGVMPSDASVGVAHDAFNTFFSETGSGKHVPRAIFLDLEPTVIDEV 78

Query: 183 RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKDIVDICLDRVRKLADNCAGLQGFL 356
           RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGK+IVD+CLDRVRKLADNC GLQGFL
Sbjct: 79  RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFL 136


>ref|XP_002303998.1| tubulin alpha-2 chain [Populus trichocarpa]
           gi|222841430|gb|EEE78977.1| tubulin alpha-2 chain
           [Populus trichocarpa]
          Length = 450

 Score =  232 bits (591), Expect = 3e-59
 Identities = 107/118 (90%), Positives = 114/118 (96%)
 Frame = +3

Query: 3   SCWELYCVEHGIQPDGNMPSDTSVGVANDSFNTFFSETNSGKHVPRAIFLDLEPTVVDEV 182
           +CWELYC+EHGIQPDG MPSD SVGVA+D+FNTFFSET SGKHVPRAIFLDLEPTV+DEV
Sbjct: 19  ACWELYCLEHGIQPDGVMPSDASVGVAHDAFNTFFSETGSGKHVPRAIFLDLEPTVIDEV 78

Query: 183 RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKDIVDICLDRVRKLADNCAGLQGFL 356
           RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGK+IVD+CLDRVRKLADNC GLQGFL
Sbjct: 79  RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFL 136


>emb|CAD24765.1| alpha-tubulin [Miscanthus sinensis]
          Length = 450

 Score =  231 bits (590), Expect = 4e-59
 Identities = 106/118 (89%), Positives = 115/118 (97%)
 Frame = +3

Query: 3   SCWELYCVEHGIQPDGNMPSDTSVGVANDSFNTFFSETNSGKHVPRAIFLDLEPTVVDEV 182
           SCWELYC+EHGIQPDG MPSDTSVGVA+D+FNTFFSET SGKHVPRAIF+DLEPTV+DEV
Sbjct: 19  SCWELYCLEHGIQPDGTMPSDTSVGVAHDAFNTFFSETGSGKHVPRAIFVDLEPTVIDEV 78

Query: 183 RTGTYRQLFHPEQLISGKEDAANNFARGHYTVGKDIVDICLDRVRKLADNCAGLQGFL 356
           RTG+YRQLFHPEQLISGKE+AANNFARGHYTVGK+IVD+CLDRVRKLADNC GLQGFL
Sbjct: 79  RTGSYRQLFHPEQLISGKENAANNFARGHYTVGKEIVDLCLDRVRKLADNCTGLQGFL 136


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