BLASTX nr result

ID: Panax21_contig00029138 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00029138
         (602 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003634432.1| PREDICTED: putative pumilio homolog 7, chlor...   199   3e-49
ref|XP_002510128.1| RNA binding protein, putative [Ricinus commu...   180   1e-43
ref|XP_002302423.1| predicted protein [Populus trichocarpa] gi|2...   179   3e-43
ref|XP_002326968.1| predicted protein [Populus trichocarpa] gi|2...   176   2e-42
ref|XP_002975751.1| hypothetical protein SELMODRAFT_53499 [Selag...   160   2e-37

>ref|XP_003634432.1| PREDICTED: putative pumilio homolog 7, chloroplastic-like [Vitis
           vinifera]
          Length = 574

 Score =  199 bits (506), Expect = 3e-49
 Identities = 99/193 (51%), Positives = 138/193 (71%), Gaps = 2/193 (1%)
 Frame = -3

Query: 573 NLSVDSHLLNTQLQLPQEFNFLNLNDFKGRIVSLAKDQHWSRILQAKF-SDPTQEQIEMV 397
           N  +++H  N QLQ     N+L L DF+GR+V LA +QH  R LQ K  ++ T ++IEM+
Sbjct: 224 NRGLNNHF-NHQLQQYLSLNYLCLEDFRGRVVPLAMNQHGCRFLQEKLQNNVTVKEIEMI 282

Query: 396 LSEVIDYIGDLMNNQFGNYFVQKLIIVCNEEQMNRIIVSVTTN-FQLLSICLNPYGTRGV 220
            SEVI ++  LM +QFGNY VQKL+ +CNEEQ  +I++S TTN +QL+ ICLN +GTR +
Sbjct: 283 FSEVIHHVAQLMLDQFGNYVVQKLVEICNEEQRTQILLSATTNQYQLIFICLNMHGTRVM 342

Query: 219 QKLMENLSSPQQVSLLMAVLSPRAATLANDQNGHHVIQYCATHFSTEDNMLLLNNIADNC 40
           QKL+E L++P+Q+S+ M+ L P    L  D +GHHVIQ+C   FS +DNM L+  +A+NC
Sbjct: 343 QKLLEYLTTPEQISIAMSALWPVTVALTKDTSGHHVIQHCLKLFSCQDNMYLIKEVAENC 402

Query: 39  YRVATNRSGCCVL 1
           + +ATNRSGCCVL
Sbjct: 403 FEIATNRSGCCVL 415


>ref|XP_002510128.1| RNA binding protein, putative [Ricinus communis]
           gi|223550829|gb|EEF52315.1| RNA binding protein,
           putative [Ricinus communis]
          Length = 542

 Score =  180 bits (457), Expect = 1e-43
 Identities = 93/179 (51%), Positives = 123/179 (68%), Gaps = 9/179 (5%)
 Frame = -3

Query: 510 LNLNDFKGRIVSLAKDQHWSRILQAKFSDPTQEQIEMVLSEVIDYIGDLMNNQFGNYFVQ 331
           L L +  GRI   AKDQ   ++++    + T E+I+MVL E+ID + +LM + FGNY VQ
Sbjct: 207 LPLENLMGRIARYAKDQFGCKLVRKALENVTHEKIDMVLLEIIDSVAELMPHPFGNYVVQ 266

Query: 330 KLIIVCNEEQMNRIIVSVTTN-FQLLSICLNPYGTRGVQKLMENLSSPQQVS-------- 178
           KL+ VC+EEQ  RI+++VT N  QL+SICLN +GTR VQKL+E ++S QQVS        
Sbjct: 267 KLVEVCSEEQRTRILLAVTKNEVQLVSICLNMHGTRAVQKLLEGIASTQQVSITARQQVS 326

Query: 177 LLMAVLSPRAATLANDQNGHHVIQYCATHFSTEDNMLLLNNIADNCYRVATNRSGCCVL 1
           L+M+ LS  A  LA D NGHHVI+YC  HF  EDN  LL  +ADNC+ +AT++SGCCVL
Sbjct: 327 LIMSALSSGAVELAKDMNGHHVIKYCLEHFLPEDNKYLLKVVADNCFDIATDKSGCCVL 385


>ref|XP_002302423.1| predicted protein [Populus trichocarpa] gi|222844149|gb|EEE81696.1|
           predicted protein [Populus trichocarpa]
          Length = 486

 Score =  179 bits (455), Expect = 3e-43
 Identities = 86/173 (49%), Positives = 123/173 (71%), Gaps = 1/173 (0%)
 Frame = -3

Query: 516 NFLNLNDFKGRIVSLAKDQHWSRILQAKFSDPTQEQIEMVLSEVIDYIGDLMNNQFGNYF 337
           ++++  D  G+IV+LAKDQH  + LQ      T+EQI+M+  EVIDY+G L+ + FGNY 
Sbjct: 178 DYVSWEDLSGKIVALAKDQHGCKFLQRLIESATREQIDMLFYEVIDYVGGLIADPFGNYV 237

Query: 336 VQKLIIVCNEEQMNRIIVSVT-TNFQLLSICLNPYGTRGVQKLMENLSSPQQVSLLMAVL 160
           VQKLI V +EEQ  R++  +T T+FQL+ ICL+ +GTR VQKL+  +++P QVSL+++ L
Sbjct: 238 VQKLIEVISEEQRTRVLRMLTRTDFQLVRICLDVHGTRAVQKLLNCITNPLQVSLVVSAL 297

Query: 159 SPRAATLANDQNGHHVIQYCATHFSTEDNMLLLNNIADNCYRVATNRSGCCVL 1
           +  A  L  D NGHHVIQ+   HFS +DN  +L  +A+ C+ +ATN+SGCCVL
Sbjct: 298 NQGAVALIKDSNGHHVIQHSMKHFSPQDNKYILKQVAEKCFEIATNKSGCCVL 350


>ref|XP_002326968.1| predicted protein [Populus trichocarpa] gi|222835283|gb|EEE73718.1|
           predicted protein [Populus trichocarpa]
          Length = 509

 Score =  176 bits (447), Expect = 2e-42
 Identities = 91/198 (45%), Positives = 133/198 (67%), Gaps = 2/198 (1%)
 Frame = -3

Query: 588 NRNTSNLSVDSHLLNTQLQLPQEF-NFLNLNDFKGRIVSLAKDQHWSRILQAKFSDPTQE 412
           N  + N  + S   N+ ++ P    ++L+  D  G++V+LAKD +  + LQ      T+E
Sbjct: 154 NYRSINNGLVSKNQNSLIRRPLRLQDYLSWEDLSGKVVALAKDPYGCKFLQKLIESATRE 213

Query: 411 QIEMVLSEVIDYIGDLMNNQFGNYFVQKLIIVCNEEQMNRIIVSVT-TNFQLLSICLNPY 235
           QI+M+  EVI Y+G L+ + FGNY VQKL+ V +EEQ   I+  +T T+FQL+ ICL+ +
Sbjct: 214 QIDMLFYEVIGYVGGLIVDPFGNYVVQKLVEVLSEEQRTGILRMLTRTDFQLVRICLDVH 273

Query: 234 GTRGVQKLMENLSSPQQVSLLMAVLSPRAATLANDQNGHHVIQYCATHFSTEDNMLLLNN 55
           GTR VQKL+  +++PQQVS++++ LS  A  L  D NGHHVIQ+   HFSTEDN  +L  
Sbjct: 274 GTRVVQKLLNCITNPQQVSIVVSALSQGAVALITDSNGHHVIQHFFKHFSTEDNKYILKQ 333

Query: 54  IADNCYRVATNRSGCCVL 1
           +A+NC+ +ATN+SGCCVL
Sbjct: 334 VAENCFGIATNKSGCCVL 351


>ref|XP_002975751.1| hypothetical protein SELMODRAFT_53499 [Selaginella moellendorffii]
           gi|300156752|gb|EFJ23380.1| hypothetical protein
           SELMODRAFT_53499 [Selaginella moellendorffii]
          Length = 316

 Score =  160 bits (404), Expect = 2e-37
 Identities = 79/168 (47%), Positives = 110/168 (65%)
 Frame = -3

Query: 504 LNDFKGRIVSLAKDQHWSRILQAKFSDPTQEQIEMVLSEVIDYIGDLMNNQFGNYFVQKL 325
           L + +GRI   AKDQH  R LQ KFS+ + E+I+ + +EVID++ DLM + FGNY VQKL
Sbjct: 1   LEEIEGRIYETAKDQHGCRFLQKKFSEGSLEEIDKIFAEVIDHLVDLMTDPFGNYLVQKL 60

Query: 324 IIVCNEEQMNRIIVSVTTNFQLLSICLNPYGTRGVQKLMENLSSPQQVSLLMAVLSPRAA 145
           + V N+ Q   I+  VT N +L++I LN +GTR VQKL+E L SP+QVS++ + L     
Sbjct: 61  LEVSNDTQRREILRGVTRNGELVNISLNMHGTRAVQKLIETLKSPEQVSMVTSSLMQGVV 120

Query: 144 TLANDQNGHHVIQYCATHFSTEDNMLLLNNIADNCYRVATNRSGCCVL 1
           TL  D NG+HV+Q C    S ED   +++  A +C  + T+R GCCVL
Sbjct: 121 TLIKDSNGNHVVQKCLQKLSNEDIQFIIDAAARHCVDIGTHRHGCCVL 168


Top