BLASTX nr result

ID: Panax21_contig00029087 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00029087
         (474 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002304369.1| nbs-lrr resistance protein [Populus trichoca...    87   1e-15
ref|XP_002865245.1| predicted protein [Arabidopsis lyrata subsp....    80   1e-13
ref|XP_004158158.1| PREDICTED: putative disease resistance prote...    77   2e-12
ref|XP_004152417.1| PREDICTED: putative disease resistance prote...    76   3e-12
ref|XP_002867958.1| mob1/phocein family protein [Arabidopsis lyr...    74   2e-11

>ref|XP_002304369.1| nbs-lrr resistance protein [Populus trichocarpa]
           gi|222841801|gb|EEE79348.1| nbs-lrr resistance protein
           [Populus trichocarpa]
          Length = 1265

 Score = 87.0 bits (214), Expect = 1e-15
 Identities = 59/158 (37%), Positives = 88/158 (55%), Gaps = 3/158 (1%)
 Frame = +1

Query: 10  VIMNKPELDLYDFLQPGFGATARLGLATIFESNS-EGFGRITHGDGIMQALSKDNKGQFF 186
           VI+      + D    GF  TA LGLA++      +G  +IT  DG+++ L    K +  
Sbjct: 321 VILEGATQSIVDNRLGGFSGTANLGLASLVPGGELKGLDKITPMDGMIKTLCSGKKWKEV 380

Query: 187 STLLLDGDHSEDVLISTLLSK-EKLQVLALFNSTIKSLTSLLSGMKSLRVLVLRGCDVME 363
             LL+ G      +   L  + + L+VLA+F+  +K L S LS +K L VLVLRGCD+++
Sbjct: 381 HALLIHGSRLLREVPEKLFQRMDGLEVLAVFDLKLKQLPSSLSQLKYLHVLVLRGCDLLD 440

Query: 364 DI-HPLTLPSLTVLEISGPSSVEILPNDFFVGMHSLRT 474
           +I H   L  LTVLEISG SS+  + +DFF  +  L++
Sbjct: 441 NIDHISKLKKLTVLEISGASSLTKISDDFFAQLTQLQS 478


>ref|XP_002865245.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297311080|gb|EFH41504.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1082

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 51/153 (33%), Positives = 87/153 (56%), Gaps = 6/153 (3%)
 Frame = +1

Query: 34  DLYDFLQPGFGATARLGLATIFESN-SEGFGRITHGDGIMQALSKDNKGQFFSTLLLDGD 210
           +L D    G  A +R+ LA +  S+  +G G+I  GD I++A+    KG+  +T+L+ G+
Sbjct: 404 NLIDLRCRGILARSRISLAKVCGSDMKKGLGKINQGDDIIEAVRPTRKGKIITTVLVSGN 463

Query: 211 H----SEDVLISTLLSKEKLQVLALFNSTIKSLTSLLSGMKSLRVLVLRGCDVMEDIHPL 378
                + ++   TL   + L++L LF  T+      L  +  LRVLV+R CD ++DI  L
Sbjct: 464 RLRRETPEIFFGTL---KDLEILGLFKPTLDHFVPSLLTLVKLRVLVIRDCDRLKDIEDL 520

Query: 379 -TLPSLTVLEISGPSSVEILPNDFFVGMHSLRT 474
            +L  L VLE+SG SS++ + ++FF  +  L++
Sbjct: 521 KSLEGLRVLEVSGASSLKKISDEFFKALSKLQS 553


>ref|XP_004158158.1| PREDICTED: putative disease resistance protein At4g19050-like
           [Cucumis sativus]
          Length = 943

 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 56/158 (35%), Positives = 87/158 (55%), Gaps = 3/158 (1%)
 Frame = +1

Query: 10  VIMNKPELDLYDFLQPGFGATARLGLATIFESNSE-GFGRITHGDGIMQALSKDNKGQFF 186
           VI+ +   D+ D    GF     LGL+ ++E     G   +   DG+++   KD K    
Sbjct: 83  VIIEELVRDIPDTRYTGFVWKPTLGLSGVYEDKKWLGLDSVGPADGMIRTSEKDWKD--V 140

Query: 187 STLLLDGDH-SEDVLISTLLSKEKLQVLALFNSTIKSLTSLLSGMKSLRVLVLRGCDVME 363
           S LL+DG H  ++V+ +   + + LQVLA+F   IK+L   LS + +L  LVL+ CD++E
Sbjct: 141 SVLLVDGYHLCQEVIETYFTTLKNLQVLAIFRPRIKALPVSLSMLGNLHFLVLKDCDLLE 200

Query: 364 DIHPL-TLPSLTVLEISGPSSVEILPNDFFVGMHSLRT 474
            I  L  L +LTVLEIS   +V+ +P + F  +  LR+
Sbjct: 201 KIDDLVNLKALTVLEISNAKNVKHIPENLFECLSKLRS 238


>ref|XP_004152417.1| PREDICTED: putative disease resistance protein At4g19050-like
           [Cucumis sativus]
          Length = 1078

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 56/158 (35%), Positives = 86/158 (54%), Gaps = 3/158 (1%)
 Frame = +1

Query: 10  VIMNKPELDLYDFLQPGFGATARLGLATIFESNSE-GFGRITHGDGIMQALSKDNKGQFF 186
           VI+ +   D+ D    GF     LGL+ ++E     G   +   DG+ +   KD K    
Sbjct: 175 VIIEELVRDIPDTRYTGFVWKPTLGLSGVYEDKKWLGLDSVGPADGMTRTSEKDWKD--V 232

Query: 187 STLLLDGDH-SEDVLISTLLSKEKLQVLALFNSTIKSLTSLLSGMKSLRVLVLRGCDVME 363
           S LL+DG H  ++V+ +   + + LQVLA+F   IK+L   LS + +L  LVL+ CD++E
Sbjct: 233 SVLLVDGYHLCQEVIETYFTTLKNLQVLAIFRPRIKALPVSLSMLGNLHFLVLKDCDLLE 292

Query: 364 DIHPL-TLPSLTVLEISGPSSVEILPNDFFVGMHSLRT 474
            I  L  L +LTVLEIS   +V+ +P + F  +  LR+
Sbjct: 293 KIDDLVNLKALTVLEISNAKNVKHIPENLFECLSKLRS 330


>ref|XP_002867958.1| mob1/phocein family protein [Arabidopsis lyrata subsp. lyrata]
           gi|297313794|gb|EFH44217.1| mob1/phocein family protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1419

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 49/152 (32%), Positives = 80/152 (52%), Gaps = 5/152 (3%)
 Frame = +1

Query: 34  DLYDFLQPGFGATARLGLATIFESNS-EGFGRITHGDGIMQALSKDNKGQFFSTLLLDGD 210
           +L D    GF   + LG   ++  +  +G G+I   D ++Q +    K    +T++  G+
Sbjct: 397 NLLDLQDCGFFGRSSLGFDRVYGGDKRKGLGKIILIDDMIQTIQSKKKN--ITTIIASGN 454

Query: 211 HSEDVLISTLLSKEKLQ---VLALFNSTIKSLTSLLSGMKSLRVLVLRGCDVMEDIHPLT 381
                +      + ++Q   V+ LF  T   L   LS +K LRVLV+R CD++++I  LT
Sbjct: 455 RLRREVPGKFFERPEMQDLEVVVLFEPTFHELVQSLSKLKKLRVLVIRDCDLIDNIDKLT 514

Query: 382 -LPSLTVLEISGPSSVEILPNDFFVGMHSLRT 474
            L  L VLE+SG SS+  +P+DFF  M  L++
Sbjct: 515 GLEGLHVLEVSGASSLVNIPDDFFKNMTQLQS 546


Top