BLASTX nr result
ID: Panax21_contig00028948
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Panax21_contig00028948
(1133 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata] 132 2e-58
emb|CAD40020.2| OSJNBa0052O21.5 [Oryza sativa Japonica Group] 122 2e-57
emb|CAE05493.2| OSJNBa0022H21.13 [Oryza sativa Japonica Group] 122 2e-57
gb|ABA91954.2| retrotransposon protein, putative, unclassified [... 122 2e-57
gb|ABA96681.1| retrotransposon protein, putative, unclassified [... 124 2e-57
>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
Length = 1103
Score = 132 bits (331), Expect(3) = 2e-58
Identities = 63/121 (52%), Positives = 87/121 (71%)
Frame = +1
Query: 649 MPFLDTFSGYHQISMSKEDIPKTSLITHRAIYAYGKMTFGLLNAGATY*RMMNFVFRKQL 828
+ F+D FSG +QI M+ ED KTS IT R IY Y M FGL NAGATY R++N +F L
Sbjct: 108 LTFMDAFSGSNQIMMNPEDQEKTSFITDRGIYCYKVMPFGLKNAGATYQRLVNKMFHNHL 167
Query: 829 GRSMEVYVDDMIVKSMSFRDHLEDLESFFETVRRHKLWLNSTKCTFGLGSGKFLEYLVSK 1008
G++MEVY+DDM+VKS+ DH++ LE F + ++++ LN KCTFG+ SG+FL Y+V++
Sbjct: 168 GKTMEVYIDDMLVKSLKKEDHVKHLEECFGILNKYQMKLNPAKCTFGVPSGEFLGYIVTE 227
Query: 1009 R 1011
R
Sbjct: 228 R 228
Score = 116 bits (290), Expect(3) = 2e-58
Identities = 52/97 (53%), Positives = 77/97 (79%)
Frame = +3
Query: 372 EPLIQKRRIFAPERQRIIDEEITILLEA*FIFEIDYLEWLANVVLVQKQNGKGRLCIDYT 551
+P+ QKRR ER +I+++E+ LL+ I E+ Y EW+AN V+V+K+NGK R+CID+T
Sbjct: 20 KPVKQKRRKLGVERAKIVNDEVDKLLKIGSIREVQYPEWVANTVVVKKKNGKDRVCIDFT 79
Query: 552 DLNKTCPKDFYPLPNIEQLIDTTSGYGMLSFMDAFSG 662
DLNK CPKD +PLP+I++L+++T+G +L+FMDAFSG
Sbjct: 80 DLNKACPKDSFPLPHIDRLVESTAGNELLTFMDAFSG 116
Score = 26.2 bits (56), Expect(3) = 2e-58
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 317 MPGVSESVALHNLHVDP 367
MPG++ S+ H L+VDP
Sbjct: 1 MPGINPSIICHELNVDP 17
>emb|CAD40020.2| OSJNBa0052O21.5 [Oryza sativa Japonica Group]
Length = 1888
Score = 122 bits (306), Expect(3) = 2e-57
Identities = 60/97 (61%), Positives = 74/97 (76%)
Frame = +3
Query: 375 PLIQKRRIFAPERQRIIDEEITILLEA*FIFEIDYLEWLANVVLVQKQNGKGRLCIDYTD 554
P+ QK R APERQ I EE+ LLEA FI E+ + EWLAN V+V K NGK R+CIDYTD
Sbjct: 752 PVRQKVRRQAPERQAFICEEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDYTD 811
Query: 555 LNKTCPKDFYPLPNIEQLIDTTSGYGMLSFMDAFSGY 665
LNK CPKD YPLP I+Q++D+T+G +L F+DA+SGY
Sbjct: 812 LNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 848
Score = 114 bits (284), Expect(3) = 2e-57
Identities = 58/119 (48%), Positives = 75/119 (63%)
Frame = +1
Query: 655 FLDTFSGYHQISMSKEDIPKTSLITHRAIYAYGKMTFGLLNAGATY*RMMNFVFRKQLGR 834
FLD +SGYHQI M++ED KT+ IT Y Y M FGL NAG T+ R QLGR
Sbjct: 841 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQLGR 900
Query: 835 SMEVYVDDMIVKSMSFRDHLEDLESFFETVRRHKLWLNSTKCTFGLGSGKFLEYLVSKR 1011
++E YVDD++VK+ + L DL FET+R ++ LN KC FG+ +GK L +LVS R
Sbjct: 901 NVEAYVDDLVVKTRNQETLLSDLAETFETLRSARIKLNPNKCVFGVPAGKLLGFLVSAR 959
Score = 35.0 bits (79), Expect(3) = 2e-57
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 281 SGVDIFVWEPRDMPGVSESVALHNLHVDP 367
+ D+F W P DMPGV V H L V P
Sbjct: 720 ANADVFAWRPADMPGVPREVIEHRLAVRP 748
>emb|CAE05493.2| OSJNBa0022H21.13 [Oryza sativa Japonica Group]
Length = 1993
Score = 122 bits (307), Expect(3) = 2e-57
Identities = 60/97 (61%), Positives = 74/97 (76%)
Frame = +3
Query: 375 PLIQKRRIFAPERQRIIDEEITILLEA*FIFEIDYLEWLANVVLVQKQNGKGRLCIDYTD 554
P+ QK R APERQ I EE+ LLEA FI E+ + EWLAN V+V K NGK R+CIDYTD
Sbjct: 827 PVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDYTD 886
Query: 555 LNKTCPKDFYPLPNIEQLIDTTSGYGMLSFMDAFSGY 665
LNK CPKD YPLP I+Q++D+T+G +L F+DA+SGY
Sbjct: 887 LNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 923
Score = 113 bits (282), Expect(3) = 2e-57
Identities = 57/119 (47%), Positives = 76/119 (63%)
Frame = +1
Query: 655 FLDTFSGYHQISMSKEDIPKTSLITHRAIYAYGKMTFGLLNAGATY*RMMNFVFRKQLGR 834
FLD +SGYHQI M++ED KT+ IT IY Y M FGL NAG T+ R Q+GR
Sbjct: 916 FLDAYSGYHQIRMAREDEEKTAFITPIGIYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR 975
Query: 835 SMEVYVDDMIVKSMSFRDHLEDLESFFETVRRHKLWLNSTKCTFGLGSGKFLEYLVSKR 1011
++E YVDD++VK+ + L DL FE++R ++ LN KC FG+ +GK L +LVS R
Sbjct: 976 NVEAYVDDLVVKTRNQETLLSDLAETFESLRSARIKLNPDKCVFGVPAGKLLGFLVSAR 1034
Score = 35.0 bits (79), Expect(3) = 2e-57
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 281 SGVDIFVWEPRDMPGVSESVALHNLHVDP 367
+ D+F W P DMPGV V H L V P
Sbjct: 795 ANADVFAWRPADMPGVPREVIEHRLAVRP 823
>gb|ABA91954.2| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1759
Score = 122 bits (307), Expect(3) = 2e-57
Identities = 60/97 (61%), Positives = 74/97 (76%)
Frame = +3
Query: 375 PLIQKRRIFAPERQRIIDEEITILLEA*FIFEIDYLEWLANVVLVQKQNGKGRLCIDYTD 554
P+ QK R APERQ I EE+ LLEA FI E+ + EWLAN V+V K NGK R+CIDYTD
Sbjct: 580 PVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPEWLANPVVVPKANGKLRMCIDYTD 639
Query: 555 LNKTCPKDFYPLPNIEQLIDTTSGYGMLSFMDAFSGY 665
LNK CPKD YPLP I+Q++D+T+G +L F+DA+SGY
Sbjct: 640 LNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 676
Score = 111 bits (277), Expect(3) = 2e-57
Identities = 57/119 (47%), Positives = 75/119 (63%)
Frame = +1
Query: 655 FLDTFSGYHQISMSKEDIPKTSLITHRAIYAYGKMTFGLLNAGATY*RMMNFVFRKQLGR 834
FLD +SGYHQI M++ED KT+ IT Y Y M FGL NAG T+ R QLGR
Sbjct: 669 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGNQLGR 728
Query: 835 SMEVYVDDMIVKSMSFRDHLEDLESFFETVRRHKLWLNSTKCTFGLGSGKFLEYLVSKR 1011
++E YVDD++VK+ + L DL FE++R ++ LN KC FG+ +GK L +LVS R
Sbjct: 729 NVEAYVDDLVVKTRNQEMLLSDLAETFESLRSARIKLNPDKCVFGVPAGKLLGFLVSAR 787
Score = 37.0 bits (84), Expect(3) = 2e-57
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 227 QDWVGTDRTIPDR--VGRSASGVDIFVWEPRDMPGVSESVALHNLHVDP 367
+ W+ T +P+ V + D+F W P DMPGV V H L V P
Sbjct: 528 RQWMITGDEVPEDALVSFLRANADVFAWRPADMPGVPREVIEHRLAVRP 576
>gb|ABA96681.1| retrotransposon protein, putative, unclassified [Oryza sativa
Japonica Group]
Length = 1512
Score = 124 bits (311), Expect(3) = 2e-57
Identities = 60/97 (61%), Positives = 75/97 (77%)
Frame = +3
Query: 375 PLIQKRRIFAPERQRIIDEEITILLEA*FIFEIDYLEWLANVVLVQKQNGKGRLCIDYTD 554
P+ QK R APERQ I EE+T LLEA FI E+ + EWLAN V++ K NGK R+CIDYTD
Sbjct: 500 PVRQKVRRQAPERQAFIREEVTRLLEAGFIREVIHPEWLANPVVIPKANGKLRMCIDYTD 559
Query: 555 LNKTCPKDFYPLPNIEQLIDTTSGYGMLSFMDAFSGY 665
LNK CPKD YPLP I+Q++D+T+G +L F+DA+SGY
Sbjct: 560 LNKACPKDPYPLPRIDQIVDSTAGCDLLCFLDAYSGY 596
Score = 111 bits (278), Expect(3) = 2e-57
Identities = 57/119 (47%), Positives = 75/119 (63%)
Frame = +1
Query: 655 FLDTFSGYHQISMSKEDIPKTSLITHRAIYAYGKMTFGLLNAGATY*RMMNFVFRKQLGR 834
FLD +SGYHQI M++ED KT+ IT Y Y M FGL NAG T+ R Q+GR
Sbjct: 589 FLDAYSGYHQIRMAREDEEKTAFITPIGTYCYTTMPFGLKNAGPTFQRTTRISLGSQIGR 648
Query: 835 SMEVYVDDMIVKSMSFRDHLEDLESFFETVRRHKLWLNSTKCTFGLGSGKFLEYLVSKR 1011
++E YVDD+IVK+ + L DL FE++R ++ LN KC FG+ +GK L +LVS R
Sbjct: 649 NVEAYVDDLIVKTRNQETLLSDLAETFESLRSARIKLNPDKCVFGVPAGKLLGFLVSAR 707
Score = 35.0 bits (79), Expect(3) = 2e-57
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 281 SGVDIFVWEPRDMPGVSESVALHNLHVDP 367
+ D+F W P DMPGV V H L V P
Sbjct: 468 ANADVFAWRPADMPGVPREVIEHRLAVRP 496