BLASTX nr result

ID: Panax21_contig00028398 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Panax21_contig00028398
         (393 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309940.1| predicted protein [Populus trichocarpa] gi|2...   144   1e-32
ref|XP_002316556.1| predicted protein [Populus trichocarpa] gi|2...   138   5e-31
ref|XP_002334165.1| predicted protein [Populus trichocarpa] gi|2...   137   9e-31
ref|XP_002517696.1| TMV resistance protein N, putative [Ricinus ...   137   1e-30
ref|XP_002519358.1| leucine-rich repeat-containing protein, puta...   134   8e-30

>ref|XP_002309940.1| predicted protein [Populus trichocarpa] gi|222852843|gb|EEE90390.1|
           predicted protein [Populus trichocarpa]
          Length = 182

 Score =  144 bits (362), Expect = 1e-32
 Identities = 66/91 (72%), Positives = 83/91 (91%)
 Frame = +2

Query: 116 EASSSTSRCSYHVFLSFRGTDTRKTFTDHLYTALVQAGFRTFRDDEGLERGKHVKSELNR 295
           EASSS SRC+Y VFLSFRG DTRK FTDHL+TALVQAGF TFRDD+ ++RG++++ E+ +
Sbjct: 9   EASSSKSRCTYQVFLSFRGEDTRKNFTDHLHTALVQAGFHTFRDDDEIQRGENIEIEIQK 68

Query: 296 AIQQSRLSIIVFSKDYASSKWCLDELLMILE 388
           AI++SR+SIIVFSKDYASS+WCLDEL+MI+E
Sbjct: 69  AIKESRMSIIVFSKDYASSRWCLDELVMIME 99


>ref|XP_002316556.1| predicted protein [Populus trichocarpa]
           gi|224113739|ref|XP_002316557.1| predicted protein
           [Populus trichocarpa] gi|222859621|gb|EEE97168.1|
           predicted protein [Populus trichocarpa]
           gi|222859622|gb|EEE97169.1| predicted protein [Populus
           trichocarpa]
          Length = 166

 Score =  138 bits (347), Expect = 5e-31
 Identities = 67/99 (67%), Positives = 82/99 (82%), Gaps = 1/99 (1%)
 Frame = +2

Query: 95  METLRAQEASSST-SRCSYHVFLSFRGTDTRKTFTDHLYTALVQAGFRTFRDDEGLERGK 271
           M   + Q +SSS  S C Y VFLSFRG DTRK FTDHLYTALVQAG  TFRDD+ + RG+
Sbjct: 1   MAAAKYQASSSSRFSHCKYQVFLSFRGEDTRKNFTDHLYTALVQAGIHTFRDDDEIGRGE 60

Query: 272 HVKSELNRAIQQSRLSIIVFSKDYASSKWCLDELLMILE 388
           +++SEL +AIQQS+++IIVFSKDYASS+WCLDEL+MI+E
Sbjct: 61  NIESELQKAIQQSKIAIIVFSKDYASSRWCLDELVMIME 99


>ref|XP_002334165.1| predicted protein [Populus trichocarpa] gi|222869891|gb|EEF07022.1|
           predicted protein [Populus trichocarpa]
          Length = 166

 Score =  137 bits (345), Expect = 9e-31
 Identities = 66/99 (66%), Positives = 82/99 (82%), Gaps = 1/99 (1%)
 Frame = +2

Query: 95  METLRAQEASSST-SRCSYHVFLSFRGTDTRKTFTDHLYTALVQAGFRTFRDDEGLERGK 271
           M   + Q +SSS  S C Y VFLSFRG DTRK FTDHLYTALVQAG  TFRDD+ + RG+
Sbjct: 1   MAAAKYQASSSSRFSHCKYRVFLSFRGEDTRKNFTDHLYTALVQAGIHTFRDDDEIGRGE 60

Query: 272 HVKSELNRAIQQSRLSIIVFSKDYASSKWCLDELLMILE 388
           +++SEL +AIQQS+++IIVFSKDYASS+WCLDE++MI+E
Sbjct: 61  NIESELQKAIQQSKIAIIVFSKDYASSRWCLDEIVMIME 99


>ref|XP_002517696.1| TMV resistance protein N, putative [Ricinus communis]
           gi|223543328|gb|EEF44860.1| TMV resistance protein N,
           putative [Ricinus communis]
          Length = 1186

 Score =  137 bits (344), Expect = 1e-30
 Identities = 65/100 (65%), Positives = 83/100 (83%), Gaps = 2/100 (2%)
 Frame = +2

Query: 95  METLRAQE--ASSSTSRCSYHVFLSFRGTDTRKTFTDHLYTALVQAGFRTFRDDEGLERG 268
           M T + QE  +SSST+ C+YHVFLSFRG DTRK FTDHLYTALVQ G  TFRDD+ ++RG
Sbjct: 1   MATSKTQETSSSSSTTPCAYHVFLSFRGGDTRKNFTDHLYTALVQEGIHTFRDDDEIKRG 60

Query: 269 KHVKSELNRAIQQSRLSIIVFSKDYASSKWCLDELLMILE 388
           + ++ E+ RAI +S+LS+IV SKDYASS+WCLDEL++I+E
Sbjct: 61  EDIELEIQRAITESKLSVIVLSKDYASSRWCLDELVLIME 100


>ref|XP_002519358.1| leucine-rich repeat-containing protein, putative [Ricinus communis]
           gi|223541425|gb|EEF42975.1| leucine-rich
           repeat-containing protein, putative [Ricinus communis]
          Length = 1108

 Score =  134 bits (337), Expect = 8e-30
 Identities = 63/97 (64%), Positives = 83/97 (85%), Gaps = 3/97 (3%)
 Frame = +2

Query: 107 RAQEAS---SSTSRCSYHVFLSFRGTDTRKTFTDHLYTALVQAGFRTFRDDEGLERGKHV 277
           R+QE+S   SS+S  SYHVFLSFRG DTRK FTDHLYTAL+QAG  TFRDD+ ++RG+++
Sbjct: 6   RSQESSHFSSSSSGWSYHVFLSFRGGDTRKNFTDHLYTALIQAGIHTFRDDDEIKRGENI 65

Query: 278 KSELNRAIQQSRLSIIVFSKDYASSKWCLDELLMILE 388
           +SE+  AI++S++S++V SKDYASS+WCLDEL MI+E
Sbjct: 66  ESEIKNAIRESKISVLVLSKDYASSRWCLDELAMIME 102


Top